DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and rx2

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_571301.2 Gene:rx2 / 30473 ZFINID:ZDB-GENE-990415-237 Length:327 Species:Danio rerio


Alignment Length:287 Identity:89/287 - (31%)
Similarity:120/287 - (41%) Gaps:77/287 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 VSHGCVSKILNRYQETGSIRPGVIGGSKPKVTS------------PEIET----RIDELRKENPS 112
            |..||:|  ...|.:.|.   |.:.|...:|.|            |.:|.    ::||.:.|.  
Zfish    11 VDDGCLS--TESYHDLGK---GGVSGISSRVHSIDVILGFSKDQDPLLEPIGTHKVDEDQLEE-- 68

  Fly   113 IFSWEIREKLIKEGFADPPSTSSISRLLRGSDRGSEDGRKDYTINGI---------LGGRDSDIS 168
                  :||.:.   :||.|...|      .|: ::..:..|...|:         ||...|::.
Zfish    69 ------QEKQVN---SDPYSHLQI------PDQ-TQQQQSVYHDTGLFSTDKCDADLGDPRSNVE 117

  Fly   169 DTESEPGIP----LKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVW 229
            .....|.||    .|:|.||:|||||..||..|||||.::.|||||:|||||....|.|.|:|||
Zfish   118 SDSRSPDIPDEDQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVW 182

  Fly   230 FSNRRARLRKH----SGGSNSGLSPMNS-----GSSNVG-----------VGVGLSGAT----AP 270
            |.||||:.|:.    :|......||:.|     .:.|||           :...||.||    .|
Zfish   183 FQNRRAKWRRQEKMDTGTMKLHDSPIRSFNRPPMAPNVGPMSNSLPLDPWLSSPLSSATPMHSIP 247

  Fly   271 LGYGPLGVGSMAGYSPAPGTTATGAGM 297
            ...|| |......|:..||...|..||
Zfish   248 GFMGP-GQSLQPTYTAHPGFLNTSPGM 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 21/92 (23%)
Homeodomain 183..239 CDD:459649 35/55 (64%)
rx2NP_571301.2 Octapeptide motif 37..44 1/6 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..73 7/32 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..139 10/38 (26%)
Homeodomain 136..192 CDD:459649 35/55 (64%)
OAR 302..316 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 304..317
Nuclear localization signal. /evidence=ECO:0000255 310..314
Blue background indicates that the domain is not in the aligned region.

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