DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and sebox

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_068077188.1 Gene:sebox / 282666 ZFINID:ZDB-GENE-021206-4 Length:333 Species:Danio rerio


Alignment Length:273 Identity:68/273 - (24%)
Similarity:100/273 - (36%) Gaps:90/273 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 KQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSN 245
            :::|.||.|:..||..|||||..|.|||:..||.||..|.|.|::|||||.|||||..|    |.
Zfish    97 QRKRKRTIFSRAQLSELERAFMITPYPDITLRERLAALTLLPESKIQVWFQNRRARSMK----SK 157

  Fly   246 SGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSS 310
            ..::|::.                              .|||          .|....|.|...:
Zfish   158 KLITPVSR------------------------------RSPA----------KDCTFPATHPDLN 182

  Fly   311 HHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPGHFGSQNYYHQDYSKLTIDDFSKLTAD 375
            ...:..|..:..||.|    .|::.|.                 |.:.|:...::.|        
Zfish   183 LEQSPEANKSLRHHQQ----SLIRQAL-----------------NPWPQNRPPISPD-------- 218

  Fly   376 SVSKISPSLHLSDNYSKLEAPSNW----SQAAYHAAANYNAHVAQHQLNDYAAAAAHGNPASAYS 436
                :...|..::..|:....|::    |:...|...|.::.|  .|:|.:   |||.....:|.
Zfish   219 ----LPEILQWANRNSETPGDSSFSSCPSERIQHPFPNQSSSV--WQMNCF---AAHPEGLKSYC 274

  Fly   437 HPLPTQGQAKYWS 449
                |..||.|.|
Zfish   275 ----TTSQALYSS 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 32/55 (58%)
seboxXP_068077188.1 COG5576 53..199 CDD:227863 45/149 (30%)
Homeodomain 99..152 CDD:459649 30/52 (58%)
Blue background indicates that the domain is not in the aligned region.

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