Protein Alignment gsb-n and Pax6

DIOPT Version :10

• Sequence 1: NP_523862.1
• Gene: gsb-n / 38004
• FlyBaseID: FBgn0001147
• Length: 449
• Species: Drosophila melanogaster
• Sequence 2: XP_006234695.1
• Gene: Pax6 / 25509
• RGDID: 3258
• Length: 436
• Species: Rattus norvegicus
• Alignment Length: 422
• Identity: 155/422 - (36%)
• Similarity: 202/422 - (47%)
• Gaps: 111/422 - (26%)

  Fly    24 VNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLR--------------VSHGCVSKILN 74
            ||||||||:||||||:..|.||||:|.||.|||.|||.|:              ||:|||||||.
  Rat     8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDSENVSNGCVSKILG 72

  Fly    75 RYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFA---DPPSTSSI 136
            ||.|||||||..||||||:|.:||:.::|.:.::|.||||:||||::|:.||..   :.||.|||
  Rat    73 RYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSI 137

  Fly   137 SRLLR---------GSD------------RGS------------------------EDGRKDYTI 156
            :|:||         |:|            .||                        ::|:.:.|.
  Rat   138 NRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGQGENTN 202

  Fly   157 NGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTAL 221
            :....|.|||    |::..:.||||.:|:||:||.||:||||:.|.||.||||:.||.||....|
  Rat   203 SISSNGEDSD----EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDL 263

  Fly   222 TEARIQVWFSNRRARLRKHSGGSNSGLSPMN-------SGSSNVGVGVGLSGATAPLGYGPLGVG 279
            .|||||||||||||:.|:.....|......|       |.|.:..|...:...|.|:  .....|
  Rat   264 PEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPV--SSFTSG 326

  Fly   280 SMAG---------YS------------------PAPGTTATGAGMNDGVHHAAHAPSSHHSAATA 317
            ||.|         ||                  |.|..|::.:.|      ...:||.:..:...
  Rat   327 SMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM------LPTSPSVNGRSYDT 385

  Fly   318 AAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPG 349
            ....|..|.|....:..|...   ..|...||
  Rat   386 YTPPHMQTHMNSQPMGTSGTT---STGLISPG 414

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
gsb-n	NP_523862.1	HTH_CRP	20..141	CDD:481199	75/133 (56%)
		Homeodomain	183..239	CDD:459649	36/55 (65%)
Pax6	XP_006234695.1	PAX	4..142	CDD:128645	75/133 (56%)
		Homeodomain	226..281	CDD:459649	36/54 (67%)