DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Gm4981

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001030041.1 Gene:Gm4981 / 245263 MGIID:3645498 Length:291 Species:Mus musculus


Alignment Length:256 Identity:73/256 - (28%)
Similarity:96/256 - (37%) Gaps:58/256 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 LKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSG 242
            ::...||..|..|..|...|.:||.|...|...||||||..|.|.|..|..|..|:||  |:|..
Mouse     1 MRSSSRRPHTGLTLSQRRILAQAFERNPRPGCATREELALETGLPEDMIHTWLKNKRA--RRHRR 63

  Fly   243 GSNSG-----LSPMNSGSSNVGVGVGLSGATAPLGYGPLGVG-SMAGYSPAPGTTATGAGMNDGV 301
            |..:.     |:...||           ||.|    ||:|.| .:|..|..|...|...||:  .
Mouse    64 GRPTAQDQDLLASQVSG-----------GAPA----GPVGRGHEVAQESSLPQEEAGSTGMD--T 111

  Fly   302 HHAAHAPS-------SHHSAATAAAAAHHHTQMGG-------YDLVQSAAQ---H-------GFP 342
            ...:::||       |..|....|......||.|.       .|.:|...|   |       |..
Mouse   112 TSTSYSPSFCRESQLSQVSQPRGAGQKEVPTQAGNVGPLELLLDELQDEVQVKEHVPDPLDLGSD 176

  Fly   343 GGFAQPGHFGSQNYYHQDYSKLTIDDFSKL-TADSVSKISPSLHLSDNYSKLEAPSNWSQA 402
            .|..:|.  |||:      |..::|:.:.. ...||..||.:|......|::..||...||
Mouse   177 PGAREPE--GSQD------SLQSLDEAANSGWHTSVPSISSTLCRESQPSQVAQPSGPGQA 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709
Homeobox 185..238 CDD:278475 22/52 (42%)
Gm4981NP_001030041.1 homeodomain 6..56 CDD:238039 21/49 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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