DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb-n and Shox2

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_038693.1 Gene:Shox2 / 20429 MGIID:1201673 Length:331 Species:Mus musculus


Alignment Length:328 Identity:94/328 - (28%)
Similarity:116/328 - (35%) Gaps:114/328 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 GSDRGSEDGRKDYTINGILGGR------DSDISDTESEPGIP----------------------- 177
            |:..|...|       |..|||      |...::...|||.|                       
Mouse    77 GAGGGGAGG-------GAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKDDAKGMEDEG 134

  Fly   178 -LKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHS 241
             .|.|||||||.||.|||..|||.|..|.|||.:.||||:|...|:|||:||||.||||:.||  
Mouse   135 QTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK-- 197

  Fly   242 GGSNSGLSPMNSGSSNVGVGVGLSGATAPLGYGP-LGVGSMAGYSPAPGTTATGAGMNDGVHHAA 305
                      .....:.||.:|.:.........| :.||::.  .|....:           |..
Mouse   198 ----------QENQLHKGVLIGAASQFEACRVAPYVNVGALR--MPFQQDS-----------HCN 239

  Fly   306 HAPSSHHSAA-----TAAAAAHHHTQMGGYDLVQSAAQHG----FPGGFAQPGHFGSQNYYHQDY 361
            ..|.|....|     :|.|.||||       |....|.|.    ||   |.|  ||.        
Mouse   240 VTPLSFQVQAQLQLDSAVAHAHHH-------LHPHLAAHAPYMMFP---APP--FGL-------- 284

  Fly   362 SKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAA 426
                  ..:.|.|||.|                |.|..:.||.....:.|:.:|..:|.....||
Mouse   285 ------PLATLAADSAS----------------AASVVAAAAAAKTTSKNSSIADLRLKAKKHAA 327

  Fly   427 AHG 429
            |.|
Mouse   328 ALG 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 35/55 (64%)
Shox2NP_038693.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..140 13/69 (19%)
Homeodomain 141..197 CDD:459649 35/55 (64%)
OAR 311..327 CDD:461067 3/15 (20%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 313..326 2/12 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.