DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and pax-1

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_505120.1 Gene:pax-1 / 187105 WormBaseID:WBGene00003937 Length:257 Species:Caenorhabditis elegans


Alignment Length:183 Identity:80/183 - (43%)
Similarity:107/183 - (58%) Gaps:32/183 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 88
            ||||||||:||||||..:|.||||::..|.|||.|||||::|||||||||.|:.|.|:|.||.||
 Worm    65 VNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHGCVSKILTRFSENGTIMPGTIG 129

  Fly    89 GSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFADP---PSTSSISRLLRGSDRGSEDG 150
            ||:|:||:|::...|..|::.:|.||:||||::||.....|.   ||.|||||:||..:.|:...
 Worm   130 GSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRANLPSVSSISRILRNKNGGNSSS 194

  Fly   151 RK--------------------------DYT---INGILGGRDSDISDTESEP 174
            ..                          :|.   :|.|.|..|..:|.:.:.|
 Worm   195 SSSSQLRYIRDQLAEQQQQQHLQQHQYMEYNNNELNQISGNLDYQVSSSNTPP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 70/119 (59%)
Homeodomain 183..239 CDD:459649
pax-1NP_505120.1 PAX 61..185 CDD:128645 70/119 (59%)
Blue background indicates that the domain is not in the aligned region.

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