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Protein Alignment gsb-n and pax-2
DIOPT Version :10
| Sequence 1: | NP_523862.1 |
Gene: | gsb-n / 38004 |
FlyBaseID: | FBgn0001147 |
Length: | 449 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_500513.1 |
Gene: | pax-2 / 187062 |
WormBaseID: | WBGene00003938 |
Length: | 351 |
Species: | Caenorhabditis elegans |
| Alignment Length: | 121 |
Identity: | 76/121 - (62%) |
| Similarity: | 96/121 - (79%) |
Gaps: | 3/121 - (2%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 24 VNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 88
||||||||:||||||:.||.:||||:..|.|||.|||||:||||||||||.||..|||:||||||
Worm 95 VNQLGGVFVNGRPLPDTIRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTGSVRPGVIG 159
Fly 89 GSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKE---GFADPPSTSSISRLLR 141
||||||.:|.:...|...::.||::|:||||:|||:: |..:.||.|||:|::|
Worm 160 GSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSINRIVR 215
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| gsb-n | NP_523862.1 |
HTH_CRP |
20..141 |
CDD:481199 |
75/119 (63%) |
| Homeodomain |
183..239 |
CDD:459649 |
|
| pax-2 | NP_500513.1 |
PAX |
91..215 |
CDD:128645 |
75/119 (63%) |
|
Blue background indicates that the domain is not in
the aligned region.
|
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