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Protein Alignment gsb-n and npax-2
DIOPT Version :9
Sequence 1: | NP_523862.1 |
Gene: | gsb-n / 38004 |
FlyBaseID: | FBgn0001147 |
Length: | 449 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_508396.3 |
Gene: | npax-2 / 185967 |
WormBaseID: | WBGene00018591 |
Length: | 233 |
Species: | Caenorhabditis elegans |
Alignment Length: | 132 |
Identity: | 50/132 - (37%) |
Similarity: | 75/132 - (56%) |
Gaps: | 19/132 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 19 QGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 83
:..|| ||||..:..|.||....|.:||::...|.:.|.||::|.|:|.|||||||||::|||::
Worm 97 RSSGR-NQLGRTYSPGLPLSMCEREEIVKLFQGGWKICDISKRLCVTHSCVSKILNRYRQTGSVK 160
Fly 84 PGVIGGSKPKVTSP------EIETRIDELRKENPSIFSWEIREKLIKEGFA---DPPSTSSISRL 139
|. ...:.:..|| :..:|:...|:. ||||:||::|.. :.||.|||:.:
Worm 161 PK--DAKEGRTESPLVLAVRDYRSRLGMCRQS-------EIREQLIRDGVCTRDNAPSRSSINHI 216
Fly 140 LR 141
||
Worm 217 LR 218
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
gsb-n | NP_523862.1 |
PAX |
20..141 |
CDD:278709 |
48/129 (37%) |
Homeobox |
185..238 |
CDD:278475 |
|
npax-2 | NP_508396.3 |
PAX |
97..218 |
CDD:128645 |
48/130 (37%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG0849 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000011 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
4 | 3.810 |
|
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