DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and npax-2

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_508396.3 Gene:npax-2 / 185967 WormBaseID:WBGene00018591 Length:233 Species:Caenorhabditis elegans


Alignment Length:132 Identity:50/132 - (37%)
Similarity:75/132 - (56%) Gaps:19/132 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIR 83
            :..|| ||||..:..|.||....|.:||::...|.:.|.||::|.|:|.|||||||||::|||::
 Worm    97 RSSGR-NQLGRTYSPGLPLSMCEREEIVKLFQGGWKICDISKRLCVTHSCVSKILNRYRQTGSVK 160

  Fly    84 PGVIGGSKPKVTSP------EIETRIDELRKENPSIFSWEIREKLIKEGFA---DPPSTSSISRL 139
            |.  ...:.:..||      :..:|:...|:.       ||||:||::|..   :.||.|||:.:
 Worm   161 PK--DAKEGRTESPLVLAVRDYRSRLGMCRQS-------EIREQLIRDGVCTRDNAPSRSSINHI 216

  Fly   140 LR 141
            ||
 Worm   217 LR 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 48/129 (37%)
Homeobox 185..238 CDD:278475
npax-2NP_508396.3 PAX 97..218 CDD:128645 48/130 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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