DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Pax4

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_035168.1 Gene:Pax4 / 18506 MGIID:97488 Length:349 Species:Mus musculus


Alignment Length:363 Identity:131/363 - (36%)
Similarity:177/363 - (48%) Gaps:58/363 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 84
            |...||||||:|:||||||...|.:||::|..|:|||.|||.|:||:|||||||.||..||.:.|
Mouse     5 GLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYYRTGVLEP 69

  Fly    85 GVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFA---DPPSTSSISRLLRGSDRG 146
            ..||||||::.:|.:..||.:|:.|.|::|:|||:.:|..||..   ..||.|||:|:||..   
Mouse    70 KCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAPSVSSINRVLRAL--- 131

  Fly   147 SEDGRKDYT-------INGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRT 204
            .||....:|       :..:|....|:.    ..|..|......|:||.|:..|.||||:.|.|.
Mouse   132 QEDQSLHWTQLRSPAVLAPVLPSPHSNC----GAPRGPHPGTSHRNRTIFSPGQAEALEKEFQRG 192

  Fly   205 QYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHS---------GGSNSGLSPMNSGSSNVGV 260
            ||||...|.:||..|:|.|..::||||||||:.|:..         |.|.....|.||      .
Mouse   193 QYPDSVARGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWEAQLPGASQDLTVPKNS------P 251

  Fly   261 GVGLSGATAPLGYGPLGVGSMAGYSPAPGT-------TATGAGMNDGVHHAAHAP---------- 308
            |: :|...:|   |.:...::....|...:       ||.|...:|....|...|          
Mouse   252 GI-ISAQQSP---GSVPSAALPVLEPLSPSFCQLCCGTAPGRCSSDTSSQAYLQPYWDCQSLLPV 312

  Fly   309 --SSHHSAATAAAAAH--HHTQMGGYDLVQSAAQHGFP 342
              ||:...|......|  ||. :||...|.|.....:|
Mouse   313 ASSSYVEFAWPCLTTHPVHHL-IGGPGQVPSTHCSNWP 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 65/123 (53%)
Homeobox 185..238 CDD:278475 28/52 (54%)
Pax4NP_035168.1 PAX 5..129 CDD:128645 65/123 (53%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64 36/55 (65%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131 20/47 (43%)
Homeobox 174..226 CDD:278475 28/51 (55%)
Transcription repression 278..349 16/71 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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