DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Pax3

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:483 Identity:204/483 - (42%)
Similarity:252/483 - (52%) Gaps:96/483 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGYPFQ-----GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKIL 73
            :|:|.:     |||||||||||||||||||||||.||||||..|:||||||||||||||||||||
Mouse    23 SGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKIL 87

  Fly    74 NRYQETGSIRPGVIGGSKPK-VTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD---PPSTS 134
            .|||||||||||.||||||| ||:|::|.:|:|.::|||.:||||||:||:|:...|   .||.|
Mouse    88 CRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVS 152

  Fly   135 SISRLLR-----GSDRGSEDGRKD---------YTINGILGGRDS-----DISDTESEPGIPLKR 180
            ||||:||     |.:..::..||:         ::|:|||..|.|     :.||.:|||.:||||
Mouse   153 SISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217

  Fly   181 KQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSN 245
            |||||||||||||||.|||||.||.|||:||||||||...|||||:||||||||||.||.:|.:.
Mouse   218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

  Fly   246 SGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSM-------AGYSPAPGTTATGAGMNDGVHH 303
              |...|.              ..|.|:.|..:.::       ..|.|.            .:..
Mouse   283 --LMAFNH--------------LIPGGFPPTAMPTLPTYQLSETSYQPT------------SIPQ 319

  Fly   304 AAHAPSS--HHSAATAAAAAHHHTQMGGYDLVQS----AAQHGF---------PGGFAQP----- 348
            |...|||  |.......:..|..|.....|...:    :.:|||         |.|.:.|     
Mouse   320 AVSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTI 384

  Fly   349 -------------GHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS 400
                         .|.|..:....||:...:....:.|....:..|..|....|...|.....:.
Mouse   385 GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPYC 449

  Fly   401 QAAYHAAANYNAHVAQHQLNDYAAAAAH 428
            ...|..|......|..:|...|..:|.|
Mouse   450 PPTYSTAGYSMDPVTGYQYGQYGQSAFH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 94/124 (76%)
Homeodomain 183..239 CDD:459649 46/55 (84%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 94/124 (76%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 50/55 (91%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 25/47 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 27/62 (44%)
Homeodomain 220..276 CDD:459649 46/55 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 10/53 (19%)
Pax7 347..391 CDD:403540 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.

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