DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Pax3

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:483 Identity:204/483 - (42%)
Similarity:252/483 - (52%) Gaps:96/483 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGYPFQ-----GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKIL 73
            :|:|.:     |||||||||||||||||||||||.||||||..|:||||||||||||||||||||
Mouse    23 SGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKIL 87

  Fly    74 NRYQETGSIRPGVIGGSKPK-VTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD---PPSTS 134
            .|||||||||||.||||||| ||:|::|.:|:|.::|||.:||||||:||:|:...|   .||.|
Mouse    88 CRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVS 152

  Fly   135 SISRLLR-----GSDRGSEDGRKD---------YTINGILGGRDS-----DISDTESEPGIPLKR 180
            ||||:||     |.:..::..||:         ::|:|||..|.|     :.||.:|||.:||||
Mouse   153 SISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217

  Fly   181 KQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSN 245
            |||||||||||||||.|||||.||.|||:||||||||...|||||:||||||||||.||.:|.:.
Mouse   218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

  Fly   246 SGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSM-------AGYSPAPGTTATGAGMNDGVHH 303
              |...|.              ..|.|:.|..:.::       ..|.|.            .:..
Mouse   283 --LMAFNH--------------LIPGGFPPTAMPTLPTYQLSETSYQPT------------SIPQ 319

  Fly   304 AAHAPSS--HHSAATAAAAAHHHTQMGGYDLVQS----AAQHGF---------PGGFAQP----- 348
            |...|||  |.......:..|..|.....|...:    :.:|||         |.|.:.|     
Mouse   320 AVSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTI 384

  Fly   349 -------------GHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS 400
                         .|.|..:....||:...:....:.|....:..|..|....|...|.....:.
Mouse   385 GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPYC 449

  Fly   401 QAAYHAAANYNAHVAQHQLNDYAAAAAH 428
            ...|..|......|..:|...|..:|.|
Mouse   450 PPTYSTAGYSMDPVTGYQYGQYGQSAFH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 94/124 (76%)
Homeobox 185..238 CDD:278475 44/52 (85%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:278709 94/124 (76%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 50/55 (91%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 25/47 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 27/62 (44%)
Homeobox 222..275 CDD:278475 44/52 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 10/53 (19%)
Pax7 347..391 CDD:289156 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm8828
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4594
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.900

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