Protein Alignment gsb-n and pax-3

DIOPT Version :10

• Sequence 1: NP_523862.1
• Gene: gsb-n / 38004
• FlyBaseID: FBgn0001147
• Length: 449
• Species: Drosophila melanogaster
• Sequence 2: NP_496189.2
• Gene: pax-3 / 185022
• WormBaseID: WBGene00003939
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 284
• Identity: 123/284 - (43%)
• Similarity: 160/284 - (56%)
• Gaps: 29/284 - (10%)

  Fly    20 GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 84
            |||||||||||||||||||.|:|..|:.||..|::||.|||||:||||.||||||||.|||||.|
 Worm    13 GQGRVNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSISP 77

  Fly    85 GVIGGS-KPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGF---ADPPSTSSISRLLR---- 141
            |.|||| :.::|...:|..|.....|||.:.:.|:|:.||.:..   .:.|:..:|.||:.
 Worm    78 GQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRLIGNKGV 142

  Fly   142 GSDRGSEDGRKDYTINGILG---GRDSDISDTESEPGIPLK-RKQRRSRTTFTAEQLEALERAFS 202
            |..:..|..|..|:|:.|||   ...|..|..:.|...|.. ...||:||:||||||:.||.||.
 Worm   143 GVPKKMERKRLSYSIDSILGISIDECSKSSSDDEEGSSPSNDASSRRNRTSFTAEQLDVLENAFR 207

  Fly   203 RTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSGA 267
            ...||....||.:::.|.|:|.:|..||||||||.||:        .||....:..|.|
 Worm   208 ADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKN--------MPMYQQYNVQGFG------ 258

  Fly   268 TAPLGYG---PLGVGSMAGYSPAP 288
            ::|..|.   |..:..:..||.:|
 Worm   259 SSPPSYPTLLPSPMMFLPSYSTSP 282

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
gsb-n	NP_523862.1	HTH_CRP	20..141	CDD:481199	69/124 (56%)
		Homeodomain	183..239	CDD:459649	30/55 (55%)
pax-3	NP_496189.2	PAX	13..141	CDD:238076	69/127 (54%)
		Homeodomain	188..244	CDD:459649	30/55 (55%)