DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and pax-3

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_496189.2 Gene:pax-3 / 185022 WormBaseID:WBGene00003939 Length:308 Species:Caenorhabditis elegans


Alignment Length:284 Identity:123/284 - (43%)
Similarity:160/284 - (56%) Gaps:29/284 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 84
            |||||||||||||||||||.|:|..|:.||..|::||.|||||:||||.||||||||.|||||.|
 Worm    13 GQGRVNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSISP 77

  Fly    85 GVIGGS-KPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGF---ADPPSTSSISRLLR---- 141
            |.|||| :.::|...:|..|.....|||.:.:.|:|:.||.:..   .:.|:..:|.||:.    
 Worm    78 GQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRLIGNKGV 142

  Fly   142 GSDRGSEDGRKDYTINGILG---GRDSDISDTESEPGIPLK-RKQRRSRTTFTAEQLEALERAFS 202
            |..:..|..|..|:|:.|||   ...|..|..:.|...|.. ...||:||:||||||:.||.||.
 Worm   143 GVPKKMERKRLSYSIDSILGISIDECSKSSSDDEEGSSPSNDASSRRNRTSFTAEQLDVLENAFR 207

  Fly   203 RTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSGA 267
            ...||....||.:::.|.|:|.:|..||||||||.||:        .||....:..|.|      
 Worm   208 ADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKN--------MPMYQQYNVQGFG------ 258

  Fly   268 TAPLGYG---PLGVGSMAGYSPAP 288
            ::|..|.   |..:..:..||.:|
 Worm   259 SSPPSYPTLLPSPMMFLPSYSTSP 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 69/124 (56%)
Homeobox 185..238 CDD:278475 28/52 (54%)
pax-3NP_496189.2 PAX 13..141 CDD:238076 69/127 (54%)
HOX 187..243 CDD:197696 30/55 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4594
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.900

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