DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Otx1

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_035153.1 Gene:Otx1 / 18423 MGIID:97450 Length:355 Species:Mus musculus


Alignment Length:344 Identity:93/344 - (27%)
Similarity:138/344 - (40%) Gaps:77/344 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 YTINGI-LGGRDSD-ISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELA 216
            |.:||: |.|...| :..:...|..|  |||||.|||||..||:.||..|::|:|||::.|||:|
Mouse    10 YGMNGLGLAGPAMDLLHPSVGYPATP--RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVA 72

  Fly   217 QTTALTEARIQVWFSNRRAR----------------------LRKHSGGSNSG--------LSPM 251
            ....|.|:|:||||.||||:                      :|:.||..:||        .|..
Mouse    73 LKINLPESRVQVWFKNRRAKCRQQQQSGNGTKTRPVKKKSSPVRESSGSESSGQFTPPAVSSSAS 137

  Fly   252 NSGSSNVGVGVGLSGATAPLGYGPLGVGSMAG-------YSPA---PGTTATGAGMNDGVHHAAH 306
            :|.|::.......:.|.|.||..|:...|...       :|||   ||:..|...:.:.:...::
Mouse   138 SSSSASSASANPAAAAAAGLGGNPVAAASSLSTPTASSIWSPASISPGSAPTSVSVPEPLAAPSN 202

  Fly   307 APSSHHSAATAAAAA-----HHHTQMGGYDLVQSAAQHGFPGG-----FAQPGHFGSQNYYHQDY 361
            |.....|.|..||.|     ..:.|.|.|.....|....:.||     :..|.|  |.::.||  
Mouse   203 ASCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPAPSSSYFGGVDCSSYLAPMH--SHHHPHQ-- 263

  Fly   362 SKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAA 426
                           :|.::||.....::....|....||::.|    ::.|...|....|..:.
Mouse   264 ---------------LSPMAPSSMAGHHHHHPHAHHPLSQSSGH----HHHHHHHHHHQGYGGSG 309

  Fly   427 AHGNPASAYSHPLPTQGQA 445
            ...|.|....:..|....|
Mouse   310 LAFNSADCLDYKEPAAAAA 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 31/77 (40%)
Otx1NP_035153.1 Homeodomain 39..95 CDD:459649 31/55 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..144 9/52 (17%)
TF_Otx 178..274 CDD:427350 26/114 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..306 12/69 (17%)
Blue background indicates that the domain is not in the aligned region.

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