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Protein Alignment gsb-n and mls-2
DIOPT Version :9
Sequence 1: | NP_523862.1 |
Gene: | gsb-n / 38004 |
FlyBaseID: | FBgn0001147 |
Length: | 449 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_508815.2 |
Gene: | mls-2 / 180751 |
WormBaseID: | WBGene00003377 |
Length: | 341 |
Species: | Caenorhabditis elegans |
Alignment Length: | 192 |
Identity: | 51/192 - (26%) |
Similarity: | 82/192 - (42%) |
Gaps: | 36/192 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 143 SDRGSEDGR----KDYTINGILGGR--------DSDI---SDTESEPGIPLKRKQRRSRTTFTAE 192
||.|.|... ||.......||. |.|| ||.|:....|.:.:::::||.|:..
Worm 147 SDNGEEKDEKSEGKDGETRDSTGGSPLESDAEDDDDIGRGSDDEANSSDPSQNRKKKTRTVFSRS 211
Fly 193 QLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSN 257
|:..||..|...:|.....|..|||...|||.::::||.|||.:.::.:...::.:| :....:|
Worm 212 QVSQLEMMFECKRYLSSQERSNLAQKLHLTETQVKIWFQNRRNKFKRQAQTDDTNIS-LQMHRAN 275
Fly 258 VGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAATAAA 319
|......:..|:|:...| ||:.|..|.:.: .|...::|||||
Worm 276 VFSIPATTALTSPILTIP--------------TTSAGVNMRNMI------SSPMDASATAAA 317
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
gsb-n | NP_523862.1 |
PAX |
20..141 |
CDD:278709 |
|
Homeobox |
185..238 |
CDD:278475 |
20/52 (38%) |
mls-2 | NP_508815.2 |
Homeobox |
204..258 |
CDD:395001 |
20/53 (38%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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