DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Phox2a

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_032913.1 Gene:Phox2a / 11859 MGIID:106633 Length:280 Species:Mus musculus


Alignment Length:215 Identity:74/215 - (34%)
Similarity:97/215 - (45%) Gaps:53/215 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 EP-GIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRAR 236
            || |:..||||||.|||||:.||:.|||.|:.|.|||:|||||||....|||||:||||.||||:
Mouse    80 EPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAK 144

  Fly   237 LRKH-----------SGGSNSG---------------LSPMNSGSSNVGVGVGLSGATAPLGYGP 275
            .||.           :.|:..|               .||....::::......|.|:..|...|
Mouse   145 FRKQERAASAKGAAGATGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPSLASPRLSPSP 209

  Fly   276 LGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHG 340
            |.....:|..|.|...|..||:..|   ....|.:                 |..:|:: |.|..
Mouse   210 LPAALGSGPGPQPLKGALWAGVAGG---GGGGPGT-----------------GAAELLK-AWQPA 253

  Fly   341 FPGGFAQPGHF-GSQNYYHQ 359
            .||    ||.| |..:.:|:
Mouse   254 EPG----PGPFSGVLSSFHR 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 37/55 (67%)
Phox2aNP_032913.1 Homeodomain 91..147 CDD:459649 37/55 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..244 20/118 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..280 3/10 (30%)
Blue background indicates that the domain is not in the aligned region.

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