DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Pax3

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_446162.1 Gene:Pax3 / 114502 RGDID:620431 Length:484 Species:Rattus norvegicus


Alignment Length:483 Identity:203/483 - (42%)
Similarity:251/483 - (51%) Gaps:96/483 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGYPFQ-----GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKIL 73
            :|:|.:     |||||||||||||||||||||||.||||||..|:||||||||||||||||||||
  Rat    23 SGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKIL 87

  Fly    74 NRYQETGSIRPGVIGGSKPK-VTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD---PPSTS 134
            .|||||||||||.||||||| ||:|::|.:|:|.::|||.:||||||:||:|:...|   .||.|
  Rat    88 CRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVS 152

  Fly   135 SISRLLR-----GSDRGSEDGRKD---------YTINGILGGRDS-----DISDTESEPGIPLKR 180
            ||||:||     |.:..::..||:         ::|:|||..|.|     :.||.:|||.:||||
  Rat   153 SISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217

  Fly   181 KQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSN 245
            |||||||||||||||.|||||.||.|||:||||||||...|||||:||||||||||.||.:|.:.
  Rat   218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

  Fly   246 SGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSM-------AGYSPAPGTTATGAGMNDGVHH 303
              |...|.              ..|.|:.|..:.::       ..|.|.            .:..
  Rat   283 --LMAFNH--------------LIPGGFPPTAMPTLPTYQLSETSYQPT------------SIPQ 319

  Fly   304 AAHAPSS--HHSAATAAAAAHHHTQMGGYDLVQS----AAQHGF---------PGGFAQP----- 348
            |...|||  |.......:..|..|.....|...:    :.:|||         |.|.:.|     
  Rat   320 AVSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPAI 384

  Fly   349 -------------GHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS 400
                         .|.|..:....||:...:....:.|....:..|..|....|...|.....:.
  Rat   385 GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPYC 449

  Fly   401 QAAYHAAANYNAHVAQHQLNDYAAAAAH 428
            ...|.........|..:|...|..:|.|
  Rat   450 PPTYSTTGYSMDPVTGYQYGQYGQSAFH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 94/124 (76%)
Homeobox 185..238 CDD:278475 44/52 (85%)
Pax3NP_446162.1 PAX 34..159 CDD:128645 94/124 (76%)
MFAP1 164..>286 CDD:336570 70/123 (57%)
Homeobox 222..276 CDD:333795 44/53 (83%)
Pax7 347..391 CDD:289156 7/43 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm9073
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.880

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