DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and prrx2

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_002940803.1 Gene:prrx2 / 100488907 XenbaseID:XB-GENE-947362 Length:248 Species:Xenopus tropicalis


Alignment Length:198 Identity:66/198 - (33%)
Similarity:95/198 - (47%) Gaps:43/198 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 GRKDYTINGIL---------------------------GGRDSDISDTESEPGIPL--------K 179
            |||:::::.:|                           .|..||...|..|.|.|.        |
 Frog    27 GRKNFSVSHLLDLEEAAAGMQTTADMAAPTEDEDKEPASGGSSDSEVTIHEGGSPNPSSNKSSGK 91

  Fly   180 RKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGG- 243
            :||||:||||.:.||:||||.|.||.|||.:.||:||:..:|:|||:||||.||||:.|::... 
 Frog    92 KKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVSLSEARVQVWFQNRRAKFRRNERAM 156

  Fly   244 -SNSGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPA------PGTTATGAGMNDGV 301
             ::...:.:.|.|.:.|....:|...:.|....:...|.:.||.|      |.||||......||
 Frog   157 LASRSATHLKSYSQDTGAEQQVSPRASTLTPEYMPWNSNSNYSNASLPPYSPTTTATSTAPTQGV 221

  Fly   302 HHA 304
            :.|
 Frog   222 NMA 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 34/55 (62%)
prrx2XP_002940803.1 Homeodomain 95..151 CDD:459649 34/55 (62%)
Blue background indicates that the domain is not in the aligned region.

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