DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment zip and ATM1

DIOPT Version :9

Sequence 1:NP_523860.2 Gene:zip / 38001 FlyBaseID:FBgn0265434 Length:2056 Species:Drosophila melanogaster
Sequence 2:NP_001154628.2 Gene:ATM1 / 821534 AraportID:AT3G19960 Length:1176 Species:Arabidopsis thaliana


Alignment Length:1308 Identity:388/1308 - (29%)
Similarity:597/1308 - (45%) Gaps:311/1308 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ALKSKSALHPKSEYPVS--------------NIHYPKAANYRQTRNYLEIAA------------- 44
            :|||..|.:.....|||              |.:.|:....|...:..:.||             
plant    11 SLKSLPADYRFDGSPVSDRLENSSGASVRLTNSNVPRKGGLRNGVSRTDTAAGDSEDSPYSGHGV 75

  Fly    45 -----KMSEEVDRNDPELKYLSVERNQFNDPATQAEWTQKRLV--WVPHENQGFVAASIKREHGD 102
                 .::::||.....:.....:..:::|.:..|   :|:::  |:...|..:....|....|:
plant    76 FVEEQSLTDDVDSGAATMPLPQSDERRWSDTSAYA---RKKILQSWIQLPNGNWELGKILSTSGE 137

  Fly   103 EVEVELAETGKRVMILRDDIQKMNPPKFDKVEDMAELTCLNEASVLHNIKDRYYSGLIYTYSGLF 167
            |..:.|.| ||.:.::.:.:...||...|.|:|:.:|:.|||.|||:|:..||...:|||.:|..
plant   138 ESVISLPE-GKVIKVISETLVPANPDILDGVDDLMQLSYLNEPSVLYNLNYRYNQDMIYTKAGPV 201

  Fly   168 CVVVNPYKKLPIYTEKIMERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSI----LC------ 222
            .|.|||:|::|:|..:.:|.|:  |:....|||:||.|:|.|.|:.|..:|||    :|      
plant   202 LVAVNPFKEVPLYGNRYIEAYR--KKSNESPHVYAIADTAIREMIRDEVNQSIIIRCICIHESMT 264

  Fly   223 ------TGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPHPAVLINFSVNTNKYIKVKIMAQNQ 281
                  :|||||||||..|..:|:||.:..    |||                            
plant   265 YSISSSSGESGAGKTETAKIAMQYLAALGG----GSG---------------------------- 297

  Fly   282 NQTIEVVNGLKMVEVNSNCQEGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGF 346
                                   :|.::|:.||||||||||||::|||||||||.|.|:|..||.
plant   298 -----------------------IEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGK 339

  Fly   347 ISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFILDDVKSYAFLSNGS-LPVPG 410
            ||||.|:|:||||||.::.|:.||::||||||.|||:|..|||..|.....|.:|...: ..:.|
plant   340 ISGAQIQTFLLEKSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYSING 404

  Fly   411 VDDYAEFQATVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNND---------------- 459
            |||...|....::::|:.::.||..|:|.:::|||..|::.|....|.:                
plant   405 VDDAERFHTVKEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLFHSLG 469

  Fly   460 -----QATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFVTKAQTKEQVEFAVEAIAKAC 519
                 |..|..|.....:|.|:|.::.::|.......::|..|.:.:..|..|...|.:|:||:.
plant   470 SWCWKQECLLHNMCLSTVAKLIGCNINELTLTLSKRNMRVRNDTIVQKLTLPQAIDARDALAKSI 534

  Fly   520 YERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFI 584
            |..:|.|||.:||:||...||:....|.|||:.|||.|:.|||||.||||.||:|||.||..:|.
plant   535 YSCLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFK 599

  Fly   585 LEQEEYQREGIEWKFIDFGLDLQPTIDLID-KPGGIMALLDEECWFPKATDKTFVDKLVSAHSMH 648
            ||||||.::||:|..:||. |.|..:.|.: ||.|:::|||||..||..||.|..:||    ..|
plant   600 LEQEEYIQDGIDWTRVDFE-DNQNCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKL----KQH 659

  Fly   649 PKFMKTDFRGVAD--FAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQG--------------- 696
            .: ..:.|||...  |.:|||||.|.|....:|.||.|.|:.:.:.||..               
plant   660 LQ-SNSCFRGDKGKLFTVVHYAGEVTYETTGFLEKNRDLLHSDSIQLLSSCSCLLPQAFASSMLI 723

  Fly   697 -SQDPFVVNIWKDAEIVGMAQQALTDTQFGARTRKGMFRTVSHLYKEQLAKLMDTLRNTNPNFVR 760
             |:.|.|..::|..   |...|.|               :|:..:|.||.:||..|.||.|:|:|
plant   724 QSEKPVVGPLYKAG---GADSQRL---------------SVATKFKSQLFQLMQRLGNTTPHFIR 770

  Fly   761 CIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQEFRQRYELLTPNVIPKGFMD 825
            ||.||:.:..|..:..|||.||||.||||  .:|:.      |::.|.....|...|::|:    
plant   771 CIKPNNIQSPGVYEQGLVLQQLRCCGVLE--VLCKG------PYKRFFIIAILHQFNILPE---- 823

  Fly   826 GKKACEKMIQALELDSNLYRVGQSKIFFRAGVLAHLEEERDFKISDLIVNFQAFCRGFLARRNYQ 890
                             :|:||.:|:|||.|.:..||:.|:..:.. |:..|:..||:.||    
plant   824 -----------------MYQVGYTKLFFRTGQIGVLEDTRNRTLHG-ILRVQSSFRGYQAR---- 866

  Fly   891 KRLQQL-NAIRIIQ--------RNCAAYLKLRNWQWWRLYTKVKPLLEVTKQEEK---------- 936
            ..|::| ..|.|:|        |...|.|:.|:.....:.::||.  ::.:.:.|          
plant   867 CLLKELKRGISILQSFVRGEKIRKEFAELRRRHKAAATIQSQVKS--KIARIQYKGIADASVVIQ 929

  Fly   937 ------LVQ--------------KEDELKQVREKLDTLAKNTQEYERKYQQALVEKTTLAEQLQA 981
                  ||:              |.:||.:|..|...|:    |.:|:.             |:|
plant   930 SAIRGWLVRRCSGDIGWLKSGGAKTNELGEVLVKASVLS----ELQRRV-------------LKA 977

  Fly   982 EIELCAEAEESRSRLMARKQELEDMMQELETRIEEEEERVLALGGEKKKLELNIQDLEEQLEEEE 1046
            |..| .|.||....|..|.|:.|:...|.||:::..||   ....:.:.|:.::...::.|..|:
plant   978 EAAL-REKEEENDILQQRLQQYENRWSEYETKMKSMEE---IWQKQMRSLQSSLSIAKKSLAVED 1038

  Fly  1047 AARQKLQLEKVQLDAKIKKYEEDLALTD---DQNQKLLKEKKLLEERANDLSQ------TLAEEE 1102
            :||..        ||.:...:    .||   ..||...:....:..|...:|.      .||||.
plant  1039 SARNS--------DASVNASD----ATDWDSSSNQFRSQTSNGVGSRLQPMSAGLSVIGRLAEEF 1091

  Fly  1103 EK--------AKHLAKLKAKHEATISELEERLHKDQQQRQESDRSKRKIETEVADLKEQLNERRV 1159
            |:        ||.|.::|:      .::|..|..|::.|    |.|:..||...|...:|.|.::
plant  1092 EQRAQVFGDDAKFLVEVKS------GQVEANLDPDRELR----RLKQMFETWKKDYGGRLRETKL 1146

  Fly  1160 QVDEMQAQ 1167
            .:.::.::
plant  1147 ILSKLGSE 1154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zipNP_523860.2 Myosin_N 80..117 CDD:280832 9/38 (24%)
Myosin_head 133..854 CDD:278492 276/777 (36%)
MYSc_Myh2_insects_mollusks 145..854 CDD:276876 270/765 (35%)
Myosin_tail_1 931..2011 CDD:279860 60/284 (21%)
Prefoldin 1431..1515 CDD:298833
FAM76 <1847..1926 CDD:292665
ATM1NP_001154628.2 MYSc 160..847 CDD:214580 284/796 (36%)
MYSc_Myo8 179..835 CDD:276834 270/765 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 565 1.000 Inparanoid score I246
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X58
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.960

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