DRSC/TRiP Functional Genomics Resources

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Protein Alignment zip and Mhc

DIOPT Version :9

Sequence 1:NP_523860.2 Gene:zip / 38001 FlyBaseID:FBgn0265434 Length:2056 Species:Drosophila melanogaster
Sequence 2:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster


Alignment Length:1994 Identity:753/1994 - (37%)
Similarity:1195/1994 - (59%) Gaps:82/1994 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 MSEEVDRNDPELKYLSVERNQFNDPATQAEWTQKRLVWVPHENQGFVAASIKREHGDEVEVELAE 110
            ::.:.|.:.....::|:|:.:.:.   ...:..|:..|:|.|.:|::...||...||.|.|.| :
  Fly     5 VANQEDEDPTPYLFVSLEQRRIDQ---SKPYDSKKSCWIPDEKEGYLLGEIKATKGDIVSVGL-Q 65

  Fly   111 TGKRVMILRDDIQKMNPPKFDKVEDMAELTCLNEASVLHNIKDRYYSGLIYTYSGLFCVVVNPYK 175
            .|:...|..:.::|:|||||:|:||||::|.||...||||::.|||:.|||||||||||.:||||
  Fly    66 GGEVRDIKSEKVEKVNPPKFEKIEDMADMTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYK 130

  Fly   176 KLPIYTEKIMERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSILCTGESGAGKTENTKKVIQF 240
            :.|:||.:..:.|:|.:|:|||||:|||:|.||.:||.:..:||:|.||||||||||||||||.:
  Fly   131 RYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAY 195

  Fly   241 LAYVAASKPKGSGAVPHPAVLINFSVNTNKYIKVKIMAQNQNQTIEVVNGLKMVEVNSNCQEGEL 305
            .|.|.|||                  .|::..|.|                           |.|
  Fly   196 FATVGASK------------------KTDEAAKSK---------------------------GSL 215

  Fly   306 EQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGFISGANIETYLLEKSRAIRQAKDER 370
            |.|::|.||:||||||||||:|||||||||||||:|..:|.::||:||||||||:|.|.|...||
  Fly   216 EDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLER 280

  Fly   371 TFHIFYQLLAGATPEQREKFIL-DDVKSYAFLSNGSLPVPGVDDYAEFQATVKSMNIMGMTSEDF 434
            ::|||||:::|:.|..::..:| |::..|..:|.|.:.|..:||..||..|.::.:|:|.|.::.
  Fly   281 SYHIFYQIMSGSVPGVKDICLLTDNIYDYHIVSQGKVTVASIDDAEEFSLTDQAFDILGFTKQEK 345

  Fly   435 NSIFRIVSAVLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFV 499
            ..::||.:||:..|.|||:|....:||.........:::.|.|....::.:..|.||||||.:||
  Fly   346 EDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVGNEFV 410

  Fly   500 TKAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQ 564
            |:.:..:||..::.|:.|..::|:|||||.:.|.:|| |:::...|||:||:|||||||.|.|||
  Fly   411 TQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLD-TQQKRQHFIGVLDIAGFEIFEYNGFEQ 474

  Fly   565 LCINYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPGGIMALLDEECWF 629
            ||||:|||||||.|||.||:||||||:||||:|.|||||:||...||||:||.||:::|:||..|
  Fly   475 LCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPMGILSILEEESMF 539

  Fly   630 PKATDKTFVDKLVSAH------SMHPKFMKTDFRGVADFAIVHYAGRVDYSAAKWLMKNMDPLNE 688
            |||||:||.:||.:.|      ...||..|.. :..|.|||.||||.|.|:...||.||.||||:
  Fly   540 PKATDQTFSEKLTNTHLGKSAPFQKPKPPKPG-QQAAHFAIAHYAGCVSYNITGWLEKNKDPLND 603

  Fly   689 NIVSLLQGSQDPFVVNIWKD-AEIVGMAQQALTDTQFGARTRK-GMFRTVSHLYKEQLAKLMDTL 751
            .:|...:.||:..::.|:.| |...|..:||.     |.|.:| |.|.|||..|||||..||.||
  Fly   604 TVVDQFKKSQNKLLIEIFADHAGQSGGGEQAK-----GGRGKKGGGFATVSSAYKEQLNSLMTTL 663

  Fly   752 RNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQEFRQRYELLTP 816
            |:|.|:||||||||..|:.|.:||.||:.||.||||||||||||:|||||:.:.:|:.||:::.|
  Fly   664 RSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCP 728

  Fly   817 NVIPKGFMDGKKACEKMIQALELDSNLYRVGQSKIFFRAGVLAHLEEERDFKISDLIVNFQAFCR 881
            .:: :|....|||.|.:|:.::|..:.||:|.:|:|||||||..:||.||.::..::...||:.|
  Fly   729 KLL-QGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWAR 792

  Fly   882 GFLARRNYQKRLQQLNAIRIIQRNCAAYLKLRNWQWWRLYTKVKPLLEVTKQEEKLVQKEDELKQ 946
            |:|:|:.::|..:|..|::::|||...||:||.|.|::|:.||||||.|::.|:::.:.|::.|:
  Fly   793 GYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKK 857

  Fly   947 VREKLDTLAKNTQEYERKYQQALVEKTTLAEQLQAEIELCAEAEESRSRLMARKQELEDMMQELE 1011
            ..|......|..:|.|....:.|.|||.|.:.|..|.....:.:|..::|.|:|.:||:.:::::
  Fly   858 AEELHAAEVKVRKELEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKLTAQKNDLENQLRDIQ 922

  Fly  1012 TRIEEEEERVLALGGEKKKLELNIQDLEEQLEEEEAARQKLQLEKVQLDAKIKKYEEDLALTDDQ 1076
            .|:.:||:....|..:|||.:..|..|::.:|:.|...||.:.:|...|.:|:...:::|..|:.
  Fly   923 ERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDEL 987

  Fly  1077 NQKLLKEKKLLEERANDLSQTLAEEEEKAKHLAKLKAKHEATISELEERLHKDQQQRQESDRSKR 1141
            ..||.||||:..|......:.|...|:|..||.|:|||.|.|:.|||:.|.::::.|.:.::|||
  Fly   988 INKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKR 1052

  Fly  1142 KIETEVADLKEQLNERRVQVDEMQAQLAKREEELTQTLLRIDEESATKATAQKAQRELESQLAEI 1206
            |:|.::...:|.:.:......|::..:.::::||:....::::|.......|:..:||::::.|:
  Fly  1053 KVEGDLKLTQEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEEL 1117

  Fly  1207 QEDLEAEKAARAKAEKVRRDLSEELEALKNELLDSLDTTAAQQELRSKREQELATLKKSLEEETV 1271
            :|::|||:.|||||||.|.||:.|||.|...|.::...|:||.||..|||.||:.|::.|||..:
  Fly  1118 EEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEANI 1182

  Fly  1272 NHEGVLADMRHKHSQELNSINDQLENLRKAKTVLEKAKGTLEAENADLATELRSVNSSRQENDRR 1336
            .||..||::|.||:..:..:.:|::.|.|.|...||.|.....:..||...:..:.:.:...::.
  Fly  1183 QHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQLNDLRAGVDHITNEKAAQEKI 1247

  Fly  1337 RKQAESQIAELQVKLAEIERARSELQEKCTKLQQEAENITNQLEEAELKASAAVKSASNMESQLT 1401
            .||.:..:.|:|.||.|..|..::......||..|..::..||||||.:.|...|...::.:||.
  Fly  1248 AKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLE 1312

  Fly  1402 EAQQLLEEETRQKLGLSSKLRQIESEKEALQEQLEEDDEAKRNYERKLAEVTTQMQEIKKKAEED 1466
            :.::|.:||:|::..|..|.|.:|.:.:.|:||:||:.|.|.:.:|:|::...:.|..:.|.|.|
  Fly  1313 DTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLSKANAEAQVWRSKYESD 1377

  Fly  1467 -ADLAKELEEGKKRLNKDIEALERQVKELIAQNDRLDKSKKKIQSELEDATIELEAQRTKVLELE 1530
             ...::||||.|::|...:...|..::.|..:...|:|:|:::.:|:||..:|::.........|
  Fly  1378 GVARSEELEEAKRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLEVDRANAIANAAE 1442

  Fly  1531 KKQKNFDKILAEEKAISEQIAQERDTAEREAREKETKVLSVSRELDEAFDKIEDLENKRKTLQNE 1595
            ||||.||||:.|.|...:.:|.|.|.:::|.|...|::..:....:|..:::|.:..:.|.|.:|
  Fly  1443 KKQKAFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEGQEQLEAVRRENKNLADE 1507

  Fly  1596 LDDLANTQGTADKNVHELEKAKRALESQLAELKAQNEELEDDLQLTEDAKLRLEVNMQALRSQFE 1660
            :.||.:..|...:|:||:|||::.||::..||:|..||.|..|:..|:..||.::.:..:|.:.:
  Fly  1508 VKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEID 1572

  Fly  1661 RDLLAKEEGAEEKRRGLVKQLRDLETELDEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKED 1725
            |.:..|||..|..|:...:.|..::..|:.|.|.:..|:..|||||.|:.|:|..::..||...:
  Fly  1573 RRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKANAE 1637

  Fly  1726 ALKHAKKLQAQVKDALRDAEEAKAAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAE 1790
            |.|:.|:.|.|:||.....||.:.|:::.:.....:||:..||:.|:.:....|..::|.||.||
  Fly  1638 AQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISERRANALQNELEESRTLLEQADRGRRQAE 1702

  Fly  1791 TE----RDELAEEIANNANKGSLMIDEKRRLEARIATLEEELEE---EQSNSEVLLDRSRKAQLQ 1848
            .|    .::|.|..|.||:..:    .||:||:.:.||..:|:|   |..|||   ::::||.:.
  Fly  1703 QELADAHEQLNEVSAQNASISA----AKRKLESELQTLHSDLDELLNEAKNSE---EKAKKAMVD 1760

  Fly  1849 IEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQL 1913
            ..:|..||..|:.::|..|..|..||:|.|||:.:|.|.|.......|..|..||.::..||.:|
  Fly  1761 AARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVRELENEL 1825

  Fly  1914 ENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQK 1978
            :.|.:.....||..||.::::|||:...|::|::.::.::.:|||..:||..||.::|.||....
  Fly  1826 DGEQRRHADAQKNLRKSERRVKELSFQSEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1890

  Fly  1979 EKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSS 2022
            ...:.||.|:|.|:..|..:...:.|:..:.| .|.|.:|..:|
  Fly  1891 NLAKFRKAQQELEEAEERADLAEQAISKFRAK-GRAGSVGRGAS 1933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zipNP_523860.2 Myosin_N 80..117 CDD:280832 12/36 (33%)
Myosin_head 133..854 CDD:278492 351/729 (48%)
MYSc_Myh2_insects_mollusks 145..854 CDD:276876 344/717 (48%)
Myosin_tail_1 931..2011 CDD:279860 337/1087 (31%)
Prefoldin 1431..1515 CDD:298833 26/84 (31%)
FAM76 <1847..1926 CDD:292665 25/78 (32%)
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 12/37 (32%)
MYSc 81..777 CDD:214580 365/748 (49%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 344/717 (48%)
Myosin_tail_1 842..1897 CDD:279860 330/1061 (31%)
V_Alix_like 1557..1877 CDD:187408 103/326 (32%)
ATP-synt_B <1671..1771 CDD:304375 34/106 (32%)
TMPIT 1739..>1825 CDD:285135 30/88 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466221
Domainoid 1 1.000 621 1.000 Domainoid score I26
eggNOG 1 0.900 - - E2759_KOG0161
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 565 1.000 Inparanoid score I246
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D2308at7147
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 1 0.900 - - OOG6_100110
Panther 1 1.100 - - P PTHR45615
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X58
1110.800

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