DRSC/TRiP Functional Genomics Resources

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Protein Alignment zip and Myo1a

DIOPT Version :9

Sequence 1:NP_523860.2 Gene:zip / 38001 FlyBaseID:FBgn0265434 Length:2056 Species:Drosophila melanogaster
Sequence 2:NP_062197.1 Gene:Myo1a / 299509 RGDID:3135 Length:1043 Species:Rattus norvegicus


Alignment Length:916 Identity:301/916 - (32%)
Similarity:460/916 - (50%) Gaps:174/916 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 VEDMAELTCLNEASVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGIKRHEVP 197
            |||:..|..|:|.|::.|::.||....||||.|...:.:|||::||||..:.:.:|:....:|:.
  Rat    10 VEDLILLEPLDEESLIKNLQLRYEKKEIYTYIGNVVISMNPYQQLPIYGPEFIAKYRDYTFYELK 74

  Fly   198 PHVFAITDSAYRNMLGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPHPAVLI 262
            ||::|:.:.||:::.....||.||.||||||||||.:|.|   ::||||...||           
  Rat    75 PHIYALANVAYQSLKDRDRDQCILITGESGAGKTEASKLV---MSYVAAVCGKG----------- 125

  Fly   263 NFSVNTNKYIKVKIMAQNQNQTIEVVNGLKMVEVNSNCQEGELEQQLLQANPILEAFGNAKTVKN 327
                                   |.||.:|              :||||:||:|||||||||::|
  Rat   126 -----------------------EQVNSVK--------------EQLLQSNPVLEAFGNAKTIRN 153

  Fly   328 DNSSRFGKFIRINFDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFIL 392
            ||||||||::.|.||..|...|..|..|||||||.::|.|.||.|||||||||||..:..:...|
  Rat   154 DNSSRFGKYMDIEFDFKGSPLGGVITNYLLEKSRVVKQLKGERNFHIFYQLLAGADTQLLKALKL 218

  Fly   393 -DDVKSYAFLSNGSLPVPGVDDYAEFQATVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQER 456
             :|.:.||:|:.....|.|:||.:.|:|...:|.::|.:.|:...:..:.:.||..|::|...| 
  Rat   219 EEDARGYAYLNGEVSRVNGMDDASNFRAVQNAMAVIGFSEEEIRQVLEVTALVLKLGNVKLADE- 282

  Fly   457 NNDQAT-LP-----DNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFVTKAQTKEQVEFAVEAI 515
              .||. ||     |....|:|..::||:..::.:|..:..::.|::.|.......|.::|.:|:
  Rat   283 --FQANGLPASGVCDGKGIQEIGEMMGLNSAELEKALCSRTMETGKEKVVTVLNVIQAQYARDAL 345

  Fly   516 AKACYERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNH 580
            ||..|.|:|.|:|||||.|:.....:....:|:||:.||||.|.|||||..|||.||||||:|..
  Rat   346 AKNIYSRLFDWIVNRINESIKVGTGEKRKVMGVLDIYGFEILEDNSFEQFVINYCNEKLQQVFIE 410

  Fly   581 TMFILEQEEYQREGIEW---KFIDFGLDLQPTIDLID-KPGGIMALLDEECWFP-KATDKTFVDK 640
            .....|||||:||||.|   ::.|.|:    ..|||: ...||:|:|||||..| ..:|.||:.|
  Rat   411 LTLKEEQEEYKREGIPWTKVEYFDNGI----ICDLIEHSQRGILAMLDEECLRPGVVSDTTFLAK 471

  Fly   641 LVSAHSMHP------------KFMKTDFRGVADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSL 693
            |....|.|.            ::.:|  .|::.|.|.||||:|.|:...::.||.|.|..::...
  Rat   472 LNQLFSKHSHYESKVTQNAQRQYDRT--MGLSCFRICHYAGKVTYNVTSFIDKNNDLLFRDLSQT 534

  Fly   694 LQGSQDPFVVNIWKDA--EIVGMAQQALTDTQFGARTRKGMFRTVSHLYKEQLAKLMDTLRNTNP 756
            :..:|.|.:.:::.:.  :...:.:.....|||                |..:|.||..|.:.||
  Rat   535 MWKAQHPLLHSLFPEGNPKEASLKRPPTAGTQF----------------KNSVAILMKNLYSKNP 583

  Fly   757 NFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQEFRQRYELLTPNVIPK 821
            |::|||.||.:::.|:..:.||:.|.|..|:||.:|:.|.|:..|..::.|.:||.||:.:..|:
  Rat   584 NYIRCIKPNDQQQQGRFTSELVMVQARYLGLLENVRVRRAGYAFRQAYKPFLERYRLLSRSTWPR 648

  Fly   822 GFMDGKKACEKMIQALELDSNLYRVGQSKIFFRA-GVLAHLEEERDFKISDL------------- 872
            ...:.::..||::.:|.|.|.....|::|||.|: ..|.:|||:|..::..|             
  Rat   649 WNGEDREGVEKVLGSLILSSEELAYGRTKIFIRSPKTLFYLEEQRRLRLQQLATLIQKVYRGWRC 713

  Fly   873 ---------------------------------IVNFQAFCRGFLARRNYQKRLQQLNAIRI--- 901
                                             ::..|||.||:.||:||:|..:...||.:   
  Rat   714 RTHYQQMRKSQILISAWFRGNKQKKHYGKIRSSVLLIQAFVRGWKARKNYRKYFRSGAAITLANF 778

  Fly   902 ------------IQRNCAAYLKLRNWQW----WRLYTKVKPLLEVTKQEEKLVQKEDEL--KQV- 947
                        :::|..:...|.| .|    :|.:......|:....:.|..:..|:|  ||| 
  Rat   779 IYQSITQKFLLNLKKNLPSTKVLDN-TWPAAPYRCFNTANQELQHLFYQWKCKKYRDQLSPKQVQ 842

  Fly   948 --REKL 951
              ||||
  Rat   843 TLREKL 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zipNP_523860.2 Myosin_N 80..117 CDD:280832
Myosin_head 133..854 CDD:278492 266/746 (36%)
MYSc_Myh2_insects_mollusks 145..854 CDD:276876 260/734 (35%)
Myosin_tail_1 931..2011 CDD:279860 10/26 (38%)
Prefoldin 1431..1515 CDD:298833
FAM76 <1847..1926 CDD:292665
Myo1aNP_062197.1 MYSc_Myo1 22..681 CDD:276829 260/734 (35%)
IQ 742..764 CDD:197470 8/21 (38%)
Myosin_TH1 847..1042 CDD:399188 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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