DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3829 and scarb1

DIOPT Version :9

Sequence 1:NP_001286874.1 Gene:CG3829 / 38000 FlyBaseID:FBgn0035091 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_017213428.1 Gene:scarb1 / 387260 ZFINID:ZDB-GENE-031126-1 Length:511 Species:Danio rerio


Alignment Length:504 Identity:141/504 - (27%)
Similarity:260/504 - (51%) Gaps:46/504 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 IMLGVMFLLF--VISVTGFFVMWFTEYYNNTILENLILAENSDTA-NSWLN-PDPKYDTLLKAHI 145
            ::||.|.|||  |:...|..::      ::.|::|:.:...:|.: ..|.: |.|.:   :..:.
Zfish    12 LVLGGMALLFGTVLVFVGPIII------DDQIVKNVEINPKNDLSYTMWKDIPVPFF---MSVYF 67

  Fly   146 FHYPNIDDYLAGRADKIKVVDVGPLTYQEHTVKDEVSFNKNFTVSFRDRKSYKFLPEKSSIG-EH 209
            ||..|.|:.|.|  ::..|:..||..|:|:..||.::|::|.|||:::.:.| |..|..|:| |.
Zfish    68 FHIVNPDEILKG--ERPMVIQRGPYVYRENRWKDNITFHENHTVSYKEYRQY-FFEESMSVGDES 129

  Fly   210 EVVRVPNVPLISAAGPVKRMKAFERLAVSTWIKQFKEPLFKNLTVSEYLWGYEDSII-------- 266
            :||.:||:.::.|:..::.|....||.:||..|.|.|..|....|.|.:|||:..::        
Zfish   130 DVVTIPNMLVLGASVMMENMPFPVRLLLSTTFKTFNEGPFLTKPVGELMWGYDSKLVDFLNKYLP 194

  Fly   267 -KLKSLGRGRRRFGLLMSRNGTSVDSVQLNTGEDDITKFSIITQFNGMPQLDYWEGDECNRIDGS 330
             .|.|.|    :|||....|.::.....:.||.|||.|..::..:||:..:|||..|:||.|:|:
Zfish   195 GMLPSSG----KFGLFADFNNSNTGLFTIFTGRDDIRKVHMVDSWNGLKNVDYWRSDQCNMINGT 255

  Fly   331 EPSMFSPHLLQDRSTVNVFLQVLCRKVPLHFEKEVTIYNDIDVLRYRTPMDVFSHPSKNPANQCY 395
            ...|:.|.:.:: :|:..:....||.:.|.:::.: :.:.|.|.||.:|..:|::.:..|.|:.:
Zfish   256 AGQMWPPFMTKE-TTMPFYSPDACRSMELVYQRPL-VSSGIPVYRYVSPKTLFANGADFPPNEGF 318

  Fly   396 CQNTELCLPSGVINATKCYGDAPIFPSFPHFFTGDPVLYQDFEGIEPDAAVHQTYADIHPRFGFP 460
            |.    |..||::|.:.|...:|.|.|.|||:..||.|.....|:.|....|..:.||||..|.|
Zfish   319 CP----CRQSGLLNVSSCRHGSPTFISQPHFYNADPQLLDTVSGLSPSEDEHGLFIDIHPETGVP 379

  Fly   461 ISGASRVQINIMLDKTPILRNQGDRLKNTTILPLMWIEITSGDFSEEVLHTLYLSTFGLNAIQQT 525
            ::.:.|:|:|:.|.|...:...|:..:  .::|::|.| .||.....||||...:...|..:.:.
Zfish   380 VNVSVRLQLNLFLKKVSGISETGNIAE--VVMPMLWFE-ESGYIDGPVLHTFRTNLVVLPKVMEY 441

  Fly   526 LKYGTLLISVTSFSLIVAGVYYLNSRR-----EQQLQESKTSAELEALN 569
            ::|  :.|::...:::.|.:.:|..::     .|.|.::.::...:.:|
Zfish   442 MQY--IFIALGLAAILTAVILFLTDKKVWKKSSQTLTQAVSTRVYDNVN 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3829NP_001286874.1 CD36 91..546 CDD:279474 134/468 (29%)
scarb1XP_017213428.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582139
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 1 1.000 - - FOG0000618
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.960

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