DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment emp and Snmp2

DIOPT Version :9

Sequence 1:NP_726504.2 Gene:emp / 37999 FlyBaseID:FBgn0010435 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_001163372.1 Gene:Snmp2 / 38868 FlyBaseID:FBgn0035815 Length:556 Species:Drosophila melanogaster


Alignment Length:554 Identity:139/554 - (25%)
Similarity:230/554 - (41%) Gaps:107/554 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 WITIVVAAAL---IIGGIVVACEFTVLIDAVVDRMVALRPGAKTFGWWAKPPVEPRISLYIYNVT 113
            |..||.|..:   ::||......|..::...|::.|.::.|::.|..:...|......:||:|||
  Fly     4 WSLIVSALGVCVAVLGGYCGWILFPNMVHKKVEQSVVIQDGSEQFKRFVNLPQPLNFKVYIFNVT 68

  Fly   114 NADDFLSNGSKAIVDEVGPYVYSE-TWEKVNIVENDNGTLSYNLRKIYSFREDLSVGP--EDDVV 175
            |:|. :..|:..||:|:|||||.: ..:||.....|...:|| ::.::...:.::..|  :||.:
  Fly    69 NSDR-IQQGAIPIVEEIGPYVYKQFRQKKVKHFSRDGSKISY-VQNVHFDFDAVASAPYTQDDRI 131

  Fly   176 IVPNIPM---------------------LSATSQSKHAARFLRLAM-------ASIMDILKIKP- 211
            :..|:.|                     |::........|.|:..|       .|::.|.:..| 
  Fly   132 VALNMHMNAFLQVFEREITDIFQGFANRLNSRLNQTPGVRVLKRLMERIRGKRKSVLQISENDPG 196

  Fly   212 ----------------------FVQVSVGQLLW----------GYEDPLLKLAKDVVPK------ 238
                                  ||..||.:.|:          |....:....|:...|      
  Fly   197 LALLLVHLNANLKAVFNDPRSMFVSTSVREYLFDGVRFCINPQGIAKAICNQIKESGSKTIREKS 261

  Fly   239 EQKLPYEEFGLLYGKNGTSSDRVTVNTGVDDIRRYGIIDNFNGRTHLPHW-------TTDACNTL 296
            :..|.:..||   .|||:..:...|:||..|..|...|...:...:|..|       .|..||.:
  Fly   262 DGSLAFSFFG---HKNGSGHEVYEVHTGKGDPMRVLEIQKLDDSHNLQVWLNASSEGETSVCNQI 323

  Fly   297 AGTDGSIFPPHIDHDRILHVYDKDLCRLLPLVFEKEVMTSNEVPGYRFTPPEWVFADVDSHPDNM 361
            .|||.|.:||.......::::..|:||.:.|.::.::.... :||||::..|....|:....||.
  Fly   324 NGTDASAYPPFRQRGDSMYIFSADICRSVQLFYQTDIQYQG-IPGYRYSIGENFINDIGPEHDNE 387

  Fly   362 CFCP-------AGKPSCSPNGLFNVSLCQYDSPIMLSFPHFYLADESLRTQVEGISPPMKEKHQF 419
            |||.       ..|..|...|..:::.| .|:|::|:.||...|....|..:.|:.|..| |||.
  Fly   388 CFCVDKLANVIKRKNGCLYAGALDLTTC-LDAPVILTLPHMLGASNEYRKMIRGLKPDAK-KHQT 450

  Fly   420 FFDVQPKMGTTLRVRARIQINLAVSQVFDIKQVANFPDIIFPILWFEEGIDNLPDEVTDLMRFAE 484
            |.|||...||.|:...|:|.|:.:..:..|....|.|.::.|.:|.|||| .|..|:...  |.:
  Fly   451 FVDVQSLTGTPLQGGKRVQFNMFLKSINRIGITENLPTVLMPAIWVEEGI-QLNGEMVAF--FKK 512

  Fly   485 QVPPKIRVALIV---GLC-ALGVILLLLSTFCLI 514
            ::...::...||   .|| .:||     :..|||
  Fly   513 KLINTLKTLNIVHWATLCGGIGV-----AVACLI 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
empNP_726504.2 CD36 58..511 CDD:279474 133/543 (24%)
Snmp2NP_001163372.1 CD36 10..543 CDD:395898 136/548 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450748
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
65.850

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