DRSC/TRiP Functional Genomics Resources

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Protein Alignment emp and scarb2c

DIOPT Version :9

Sequence 1:NP_726504.2 Gene:emp / 37999 FlyBaseID:FBgn0010435 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_001352071.1 Gene:scarb2c / 337532 ZFINID:ZDB-GENE-030131-5789 Length:478 Species:Danio rerio


Alignment Length:472 Identity:161/472 - (34%)
Similarity:240/472 - (50%) Gaps:29/472 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LIIGGIVVACEFT----VLIDAVVDRMVALRPGAKTFGWWAKPPVEPRISLYIYNVTNADDFLSN 121
            |:|.||  |.|.|    .|::..|.:.:.|..|.:.|..|..||....:..|.:|:||..:.:| 
Zfish    18 LLICGI--ALELTRVLQKLVNNTVKQQIVLENGTEAFSVWQNPPPPVYMQFYFFNLTNPAEVMS- 79

  Fly   122 GSKAIVDEVGPYVYSE--TWEKVNIVENDNGTLSYNLRKIYSFREDLSVGPEDDVVIVPNIPMLS 184
            |.|..|.::|||.|.|  ..|:|..::|.....:.| .|.|.|..::|.|.:||:|...|||  :
Zfish    80 GDKPSVVQIGPYTYREYRPMEEVKFMDNGTRVAAIN-PKTYVFEPNMSRGSQDDLVRTVNIP--A 141

  Fly   185 ATSQSKHAARFLRLAMASIMDILKIKPFVQVSVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEFGL 249
            .|...|:....|...::.:|....:..|....||.|||||||||||....:||.      :.|||
Zfish   142 VTVMEKYKDSILARLISDLMKAKGVGVFETFRVGDLLWGYEDPLLKELHMLVPD------DHFGL 200

  Fly   250 LYGKNGTSSDRVTVNTGVDDIRRYGIIDNFNGRTHLPHWTTDACNTLAGTDGSIFPPHIDHDRIL 314
            .|.||||..|...:.||..|.:.:..||.:||:..|..|:::.||.:.||||:.|.|.|.....|
Zfish   201 FYKKNGTEYDSYVLLTGKPDYQDFASIDEWNGQRSLNWWSSEECNMINGTDGASFHPIITKADRL 265

  Fly   315 HVYDKDLCRLLPLVFEKEVMTSNEVPGYRFTPPEWVFADVDSHPDNMCFC-PAGKPSCSPNGLFN 378
            :::..||||.|.:.:|.:|.... |||:||.||..||:..|.:|||..|| |.|  .|..:||.|
Zfish   266 YIFSSDLCRSLYVQYECDVSVQG-VPGFRFVPPADVFSSPDINPDNAGFCVPPG--HCLGSGLLN 327

  Fly   379 VSLCQYDSPIMLSFPHFYLADESLRTQVEGISPPMKEKHQFFFDVQPKMGTTLRVRARIQINLAV 443
            .|:|:..:||::|.||||.||:.....:.|:. |:||:||.|.|:.|..|..|:...|:|:|:.:
Zfish   328 ASVCKQGAPIIMSSPHFYQADQKFVDDIWGMK-PIKEEHQTFADINPLTGIVLQGAKRVQVNVYL 391

  Fly   444 SQVFDIKQVANFPDIIFPILWFEEG--IDNLPDEVTDLMRFAEQVPPKIRVALIVGLCALGVILL 506
            .|.....|......::||:::..|.  ||.  :....|..........|.:..||  .::|::|.
Zfish   392 QQHSSFSQTGKIQTLVFPVMYINESAFIDE--ESAKKLHAVVLNANVVINIPFIV--ISVGILLG 452

  Fly   507 LLSTFCLIRNSHRQSTL 523
            ::....:.|.....|||
Zfish   453 IIFIVLMCRQQMPPSTL 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
empNP_726504.2 CD36 58..511 CDD:279474 157/458 (34%)
scarb2cNP_001352071.1 CD36 15..457 CDD:307331 157/458 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 1 1.000 - - FOG0000618
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2956
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.950

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