DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment emp and scav-6

DIOPT Version :9

Sequence 1:NP_726504.2 Gene:emp / 37999 FlyBaseID:FBgn0010435 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_492081.1 Gene:scav-6 / 184107 WormBaseID:WBGene00008542 Length:590 Species:Caenorhabditis elegans


Alignment Length:588 Identity:143/588 - (24%)
Similarity:243/588 - (41%) Gaps:109/588 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 IVVAAALIIGGIVVACEFTVLIDAVVDRMVALRPGAKT-FGW----WAKPPVEPRISLYIYNVTN 114
            :|:|...|:.|||....|:.:...:|.:.:.|...:.| .|:    :..|.|:..:..|.:||||
 Worm    15 VVIAIVFIVFGIVTWAAFSSIYSTLVIKNLQLTENSDTSLGYSAFQYTSPQVDNIMKFYFFNVTN 79

  Fly   115 ADDFLSNGSKAIVDEVGPYVYSETWEKVNI-VENDNGTLSYNLRKIYSFREDLSVG--PEDDVVI 176
            .|:.....:...:.|:||:...|:.:|..: ..:|...:.|...|.|...:|.|..  ..|..::
 Worm    80 PDEVKYYSAAPNLVEIGPFSVMESEQKKYLEFSDDKSQMFYQNYKKYILSKDYSCEDCDWDRNIV 144

  Fly   177 VPNIPMLSATSQ----SKHAARFLRLAMASIMDILKIKPFVQVSVGQLLW-GYEDPLLKLAK--- 233
            .||.|.|.|.:.    .....:..|..:|..:.||...|||...|.::|: ||||.||..|.   
 Worm   145 FPNPPGLGAVASMLDPQFQITKTGRTIIAVALTILGEYPFVSHKVREVLFDGYEDALLSAAHSGF 209

  Fly   234 -------------DVVPKEQKLP---YEEFGLLYGKNGTSSDRVTVNTGVDDIRRYGIIDNFNGR 282
                         .:||    :|   ..:||...|.|.:..:...:.||..||.:.|.:..:.|.
 Worm   210 VTVLSGIFKGDGGSIVP----IPIPAMPKFGYFQGYNNSRDEEYWIETGKKDINQIGNVQRWAGI 270

  Fly   283 THLP--HWTTDACNTLAGTD-GSIFPPHIDHDRILHVYDKDLCRLLPLVF-EKEVMTSNEVPGYR 343
            |.||  .|||....::.|:| ||....|:|......::...:||.....| ::|.:.|....||.
 Worm   271 TELPGEWWTTPKARSIRGSDSGSFTQMHLDESSTADMFFSFMCRSFTKTFYQRETIESIPTIGYH 335

  Fly   344 FTPPEWVFADVDSHPDNMCF----------------CP-------AGKPSCS------------- 372
            ....||   |..| .:|:.|                ||       :|...||             
 Worm   336 IGYDEW---DTTS-DNNVGFRYRNIEKRNYFPDWPKCPPKGQCHQSGSIDCSKSINFCHACCDGS 396

  Fly   373 --------PNGLFNVSLCQ----YDSP--IMLSFPHFYLADESLRTQVEGISPPMKEKHQFFFDV 423
                    |.|:|.: :|.    ..:|  ::.|.|||..:.:.:||.|.|::|.........:..
 Worm   397 LYNGTYLLPPGMFPL-VCYPGRLQPTPFAVVYSPPHFLFSPDEVRTTVVGMAPNKSLHEPMIYYH 460

  Fly   424 QPKMGTTLRVRARIQINLAVSQVFDIKQVANFPDIIFPILW------FEEGIDNLPDEVTDLMRF 482
            :|..||||:|..|:|:|:.|.:..|:....|.|:::.|:.|      :.:.|.|   ||  .:.|
 Worm   461 EPYSGTTLKVVNRLQVNMPVIRSHDVPSSQNMPNVMIPLFWQDTSPKYHQFIFN---EV--WLGF 520

  Fly   483 AEQVPPKIRVALIVGLCALGVILLLLSTFCLIRNSHRQSTLHLEGSNYLATAQVDMNKKQNKDNQ 547
            . .||..:||...|.| .:|::|:.:..|..:|.. :.|.:....:::|.|....::...:.::.
 Worm   521 V-LVPRLMRVLQFVAL-GIGLLLVAIIVFLQLRKG-KPSLIRPLKTSFLETTSNWLSSTSSSNSN 582

  Fly   548 PAR 550
            .:|
 Worm   583 ESR 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
empNP_726504.2 CD36 58..511 CDD:279474 136/544 (25%)
scav-6NP_492081.1 CD36 18..547 CDD:279474 136/544 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5605
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.880

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