DRSC/TRiP Functional Genomics Resources

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Protein Alignment emp and scarb1

DIOPT Version :9

Sequence 1:NP_726504.2 Gene:emp / 37999 FlyBaseID:FBgn0010435 Length:551 Species:Drosophila melanogaster
Sequence 2:XP_002935333.1 Gene:scarb1 / 100490714 XenbaseID:XB-GENE-494666 Length:505 Species:Xenopus tropicalis


Alignment Length:465 Identity:154/465 - (33%)
Similarity:241/465 - (51%) Gaps:23/465 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 ITIVVAAALIIG-GIVVACEFTVLIDAVVDRMVALRPGAK-TFGWWAKPPVEPRISLYIYNVTNA 115
            |...|...|::| |.::.....|::|..|::.|.:.|.:. .:..|...||...:|:||:.|.|.
 Frog    10 IVFGVLGVLLVGVGTLLVFLVPVIMDEQVEKNVRIDPSSGFAYEMWRDLPVPFYMSIYIFEVVNH 74

  Fly   116 DDFLSNGSKAIVDEVGPYVYSETWEKVNIVENDNGTLSYNLRKIYSFREDLSVGPEDDVVIVPNI 180
            .:.|. |.|..:.|.|||||.|..:|.||..|:|||:|:...:.:.|..:.|.|.|:|.||||||
 Frog    75 KEVLL-GEKPQLQERGPYVYREYKKKQNITFNENGTVSFVEFRTFHFDPEKSNGKEEDHVIVPNI 138

  Fly   181 PMLSATSQSKHAARFLRLAMASIMDILKIKPFVQVSVGQLLWGYEDPLLKLAKDVVPKEQKLPYE 245
            .:|.::...:.....::..::........:.|:..:|..:|||||||.|......:|  .|||::
 Frog   139 LVLGSSVMLQDLGIAIKWIISGAFSAFNEEAFINKTVKDILWGYEDPFLDFLNTFLP--GKLPFK 201

  Fly   246 -EFGLLYGKNGTSSDRVTVNTGVDDIRRYGIIDNFNGRTHLPHWTTDACNTLAGTDGSIFPPHID 309
             :||.....|.:::...|||||::||.|..::||:||...:..|.::..|.:.||.|.::||...
 Frog   202 GKFGFFSDFNNSNTGVFTVNTGMEDISRVQMVDNWNGLKKVDFWNSEQTNMINGTAGQMWPPFRK 266

  Fly   310 HDRILHVYDKDLCRLLPLVFEKEVMTSNEVPGYRFTPPEWVFADVDSHPDNMCFCPAGKPSCSPN 374
            ....|..|..|.||.:.||:|||..... :|.:|:|.|.::||:...:|.|..|||     |..:
 Frog   267 PSEPLEFYSPDACRSMKLVYEKEEKFRG-IPTFRYTAPNYLFANGSDYPPNEGFCP-----CVAS 325

  Fly   375 GLFNVSLCQYDSPIMLSFPHFYLADESLRTQVEGISPPMKEKHQFFFDVQPKMGTTLRVRARIQI 439
            |:.|||.|::::|:.|||||||.||......|||:. |.:|.|..|.|:.|..|..:....::|:
 Frog   326 GVQNVSACRFNAPLFLSFPHFYNADPGFLESVEGLH-PTEELHSLFLDMHPLTGIPMNCSIKMQL 389

  Fly   440 NLAVSQVFDIKQVANFPDIIFPILWFEEG------IDNLPDEVTDLMRFAEQVPPKIRVALI-VG 497
            |:....|..|.|......:|.|:|||.|.      :.|....:..||..   |...::..|| :|
 Frog   390 NMLTKSVSGIMQTGQIKPVILPVLWFAESGHLDGPVYNTYYNILILMPI---VLEYLQYVLIGIG 451

  Fly   498 LCALGVILLL 507
            ||.:.|.|:|
 Frog   452 LCFITVALVL 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
empNP_726504.2 CD36 58..511 CDD:279474 152/460 (33%)
scarb1XP_002935333.1 CD36 28..461 CDD:366481 148/445 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 248 1.000 Domainoid score I2091
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 1 1.000 - - FOG0000618
OrthoInspector 1 1.000 - - mtm9474
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.030

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