DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3770 and Lhfpl6

DIOPT Version :9

Sequence 1:NP_001286864.1 Gene:CG3770 / 37991 FlyBaseID:FBgn0035085 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001102653.1 Gene:Lhfpl6 / 499615 RGDID:1560177 Length:200 Species:Rattus norvegicus


Alignment Length:186 Identity:43/186 - (23%)
Similarity:79/186 - (42%) Gaps:14/186 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ITIASLVWFLCSLVADMLFAVALVTPRWLVGPAQGTDSTASSHHQSSVGIYTRCKVMQEGGFQCG 70
            :|...::|.|.|.::.....|....|.||.|...|...:..:..:.|..::...:.|.....:||
  Rat     5 LTCTGVIWALLSFLSAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVMVEECG 69

  Fly    71 RFDLDGLATDSSVYPNEWKAAMFFVMLGFSLLSVTVILTLITCCRQSACGKSIHNMTACAQVVAG 135
            |:     |:...:...||:.......||..||.:..:..|:.||......:::..:....|.:.|
  Rat    70 RY-----ASFQGIPSTEWRICTIVTGLGCGLLLLVALTALMGCCVSELISRTVGRVAGGIQFLGG 129

  Fly   136 ICMMLGLFLHPMGWRANRIQRLCGMDAEPFYPADCSIGVSFYCGIIGVLLTFTAAG 191
            :.:..|..|:|:||.:..:::.||..::.|....|.||.::||         |.||
  Rat   130 LLIGAGCALYPLGWDSEEVRQTCGYISDQFDLGKCEIGWAYYC---------TGAG 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3770NP_001286864.1 L_HGMIC_fpl 10..195 CDD:287244 42/182 (23%)
Lhfpl6NP_001102653.1 L_HMGIC_fpl 8..193 CDD:370913 42/183 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342111
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4026
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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