DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3770 and Lhfpl2

DIOPT Version :10

Sequence 1:NP_611985.2 Gene:CG3770 / 37991 FlyBaseID:FBgn0035085 Length:219 Species:Drosophila melanogaster
Sequence 2:XP_038957836.1 Gene:Lhfpl2 / 294643 RGDID:1309869 Length:224 Species:Rattus norvegicus


Alignment Length:228 Identity:76/228 - (33%)
Similarity:113/228 - (49%) Gaps:15/228 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MCYVIITIASLVWFLCSLVADMLFAVALVTPRWLVGPAQ---GTDSTASSHHQSSVGIY-TRCKV 61
            ||:||:|..|::|.|.|:|......||.::..||:|.|:   |.:..........:||. .|...
  Rat     1 MCHVIVTCRSMLWTLLSIVVAFAELVAFMSADWLIGKAKTRSGDEQAGMDSEPHYLGILCLRTPA 65

  Fly    62 MQEGGFQCGRFDLDGLATDS--SVYPNEWKAAMFFVMLGFSLLSVTVILTLITCCRQSACGKSIH 124
            ||    |..|..|.|....|  .:....|:|...|:.:|..:|.|..::::.|.|.||...|||.
  Rat    66 MQ----QVPRDTLCGTYAKSFGEIASGFWQATAIFLAMGIFILCVVALVSVFTMCVQSIMRKSIF 126

  Fly   125 NMTACAQVVAGIC----MMLGLFLHPMGWRANRIQRLCGMDAEPFYPADCSIGVSFYCGIIGVLL 185
            |:....|.:||.|    ::|||.|:|.||...:... ||..|.|:.|.|||:|.:||....|.:|
  Rat   127 NVCGLLQGIAGECCGLFLILGLVLYPAGWGCQKAID-CGRYASPYKPGDCSLGWAFYTATGGTVL 190

  Fly   186 TFTAAGISLKAESSNMRTRVRRRVEAGSKLVCI 218
            ||..|..|.:||.:....:|:..:|.|..|:|:
  Rat   191 TFICAVFSAQAEIATSSDKVQEEIEEGKNLICL 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3770NP_611985.2 L_HMGIC_fpl 10..195 CDD:463019 64/194 (33%)
Lhfpl2XP_038957836.1 L_HMGIC_fpl 9..200 CDD:463019 64/195 (33%)

Return to query results.
Submit another query.