DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pain and TrpA1

DIOPT Version :10

Sequence 1:NP_611979.1 Gene:pain / 37985 FlyBaseID:FBgn0060296 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_001261600.1 Gene:TrpA1 / 39015 FlyBaseID:FBgn0035934 Length:1232 Species:Drosophila melanogaster


Alignment Length:827 Identity:165/827 - (19%)
Similarity:280/827 - (33%) Gaps:270/827 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 LNSLAKNLT---DENAPDVYSCMQLLLD-----YGASP-------NIVDQGEFTPLHHVLRKSKV 168
            |.|.||..|   |.:.|...:|.|..:|     :...|       :..|..:.||||        
  Fly   321 LKSGAKISTQQHDLSTPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLH-------- 377

  Fly   169 KAGKKELIQLFLDHPELDIDSYRNGEVRRLLQAQFPELKLPEERHTGPEIDIQTLQRTLRDGDET 233
                  ...:| |||  ||.||        |.|:..::...::.|..|     .|....|.|.:|
  Fly   378 ------CASMF-DHP--DIVSY--------LVAEGADINALDKEHRSP-----LLLAASRSGWKT 420

  Fly   234 LF-----------------------------EQQFAEYLQNLKGGADNQLNAHQEEYFGL--LQE 267
            :.                             ...|||.:.|.:..|..:|..::::..|.  |..
  Fly   421 VHLLIRLGACISVKDAAARNVLHFVIMNGGRLTDFAEQVANCQTQAQLKLLLNEKDSMGCSPLHY 485

  Fly   268 SIKRGRQRAFDVILSTGMDINSRPGRANEANLVETAVIYGNWQALERLLKEPNLRLTPDSKLLNA 332
            :.:.|..|:.:.::..|..||.: ...||:.| ..|..||.:..:.:||         ||:..:.
  Fly   486 ASRDGHIRSLENLIRLGACINLK-NNNNESPL-HFAARYGRYNTVRQLL---------DSEKGSF 539

  Fly   333 VIGRLD----EPPYDGS--SHQRCFELLIN-----------------------SDRVD------- 361
            :|...|    .|.:..|  .|.|..:||:|                       ::.::       
  Fly   540 IINESDGAGMTPLHISSQQGHTRVVQLLLNRGALLHRDHTGRNPLQLAAMSGYTETIELLHSVHS 604

  Fly   362 --INEADSGRLVPLFFAVKYRNTSAMQKLLKNG-------------------------------- 392
              :::.|......|..|.......|:..|:..|                                
  Fly   605 HLLDQVDKDGNTALHLATMENKPHAISVLMSMGCKLVYNVLDMSAIDYAIYYKYPEAALAMVTHE 669

  Fly   393 -------AYIGSKSAFGTLPIKDMPPEVLEEHFDSCITTNGERPGDQNFEIIIDYKNL----MRQ 446
                   |....|....||.:....|:|.|...|.|||....:...::|.|...:..|    |..
  Fly   670 ERANEVMALRSDKHPCVTLALIASMPKVFEAVQDKCITKANCKKDSKSFYIKYSFAFLQCPFMFA 734

  Fly   447 ERDSGLNQLQDEMAPIAFIAESKEMRH----LLQHPLISSFLFLKWHRLSVIFYL-NFLIYSLFT 506
            :.|....:.....:||...|.:..:.|    ||.|||...:|.:||:.....|:| |.||||:|.
  Fly   735 KIDEKTGESITTASPIPLPALNTMVTHGRVELLAHPLSQKYLQMKWNSYGKYFHLANLLIYSIFL 799

  Fly   507 ASIITYTLLKFHE-----SDQRALTAFFGLLSW----LGIS------------------------ 538
            ..:..|:.|..:.     .|.:.::.:.. :.|    :.:|                        
  Fly   800 VFVTIYSSLMMNNIELKAGDNKTMSQYCN-MGWEQLTMNLSQNPSVASQIRLDSCEERINRTTAI 863

  Fly   539 ---------YLIL---RECIQWIMSPVRYFWSITNIMEVALITLSIFTCMESSFDKE-------- 583
                     |::|   ||.||.....:.|.....|::...|. :|....:..:|..:        
  Fly   864 LFCAVVIVVYILLNSMRELIQIYQQKLHYILETVNLISWVLY-ISALVMVTPAFQPDGGINTIHY 927

  Fly   584 TQRVLAV----FTILLVSMEFCLLVGSLPVLSISTHMLMLREVSNSFLKSFTLYSIFVLTFSLCF 644
            :...:||    |.:||....|.         .:..:::|..|:..:.:|...::||.::.|.|.|
  Fly   928 SAASIAVFLSWFRLLLFLQRFD---------QVGIYVVMFLEILQTLIKVLMVFSILIIAFGLAF 983

  Fly   645 YILFGKSVEEDQSKSATPCPPLGKKEGKDEEQGFNTFTKPIEAVIKTIVMLTGEFDAGSIQFTSI 709
            |||..|.:                    |.:....:|:....::::|..|:.||.|.......:.
  Fly   984 YILLSKII--------------------DPQPNHLSFSNIPMSLLRTFSMMLGELDFVGTYVNTY 1028

  Fly   710 Y---------TYLIFLLFVIFMTIVLFNLLNGLAVSDTQVIKAQAEL 747
            |         ::||..:|:|.|.|:|.|||.||||.|.:.::..|:|
  Fly  1029 YRDQLKVPMTSFLILSVFMILMPILLMNLLIGLAVGDIESVRRNAQL 1075

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
painNP_611979.1 ANKYR 2..>182 CDD:440430 17/77 (22%)
ANK repeat 82..111 CDD:293786
ANK repeat 113..152 CDD:293786 11/47 (23%)
ANKYR <243..>406 CDD:440430 39/241 (16%)
ANK repeat 324..366 CDD:293786 11/79 (14%)
ANK repeat 368..393 CDD:293786 5/63 (8%)
Ion_trans 495..746 CDD:459842 65/317 (21%)
TrpA1NP_001261600.1 Ank_2 95..183 CDD:463710
ANK repeat 125..155 CDD:293786
ANKYR 140..461 CDD:440430 35/169 (21%)
ANK repeat 157..199 CDD:293786
ANK repeat 259..298 CDD:293786
ANK repeat 300..330 CDD:293786 4/8 (50%)
ANK repeat 336..369 CDD:293786 5/32 (16%)
ANKYR 368..634 CDD:440430 57/306 (19%)
ANK repeat 374..402 CDD:293786 14/52 (27%)
ANK repeat 404..476 CDD:293786 12/76 (16%)
ANK repeat 478..509 CDD:293786 7/31 (23%)
TRPV 481..1093 CDD:454755 126/637 (20%)
ANK repeat 511..545 CDD:293786 11/43 (26%)
ANK repeat 547..576 CDD:293786 7/28 (25%)
ANK repeat 579..611 CDD:293786 0/31 (0%)
ANK repeat 613..638 CDD:293786 4/24 (17%)
Blue background indicates that the domain is not in the aligned region.

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