DRSC/TRiP Functional Genomics Resources

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Protein Alignment NaCP60E and Catsper3

DIOPT Version :9

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_001239416.1 Gene:Catsper3 / 76856 MGIID:1924106 Length:395 Species:Mus musculus


Alignment Length:389 Identity:94/389 - (24%)
Similarity:160/389 - (41%) Gaps:91/389 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  2050 IKRPINHFLAMFYDLSNSRRFEIAIFVLIFLN--MLTMGIEHYDQPHAVFFILEVSNAFFTTVFG 2112
            |||......|.|..:..|..|:|.:...:..|  :|.:| .:||.....|...|||..||.:|:.
Mouse    32 IKRKDKECQAYFRKVIKSTFFQIVMITTVTTNSFLLVLG-TNYDIQFEFFRTFEVSELFFVSVYV 95

  Fly  2113 LEAIVKIVGLRYHYFTVPWNVFDFLLVLASIFGILMEDIMIDLPISPTLLRVVR-------VFRI 2170
            .|.::|:......|:...:|:.|.:             |:|.|.| |.|||.::       .|..
Mouse    96 CEFLMKVYVDPITYWKDGYNILDVI-------------ILIILTI-PYLLRKIKGNHSAYLHFAD 146

  Fly  2171 G----RILRLIKAAKGIRKLLFALVVSLPALFNIGALLGLITFIYAILGMSLFGNVKLQGALDDM 2231
            |    |||:||..::|||.|:.|:..::..:.::..||.|:.|::||||..||| |..:|   |:
Mouse   147 GIQSLRILKLISYSRGIRTLIIAVGETVYTVASVLTLLFLLMFVFAILGFCLFG-VTDRG---DL 207

  Fly  2232 VNFQTFGRSMQLLFRLMTSAGWNDVLESLMIQPPDCDPFIHGHTNGNCGHPLLAITYFTSFIIIS 2296
            .|:.....:...||.|.|..||.|:.|.|     |...|            .::..:...||:::
Mouse   208 ENWGNLASAFFTLFSLATVDGWTDLQEEL-----DKRKF------------TVSRAFTILFILLA 255

  Fly  2297 YMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIRWSKYDPHATQFIHFSQLSDFIASLDPP 2361
            ..|.:||::.:::     .|.|:.:...|.||                            :|:..
Mouse   256 SFIFLNMFVGVMI-----MHTEDSMKKFERDL----------------------------TLERN 287

  Fly  2362 LGISKPNNVAL------VSFNLPISKGNKIHCLDILHALVKHVLGHVEE--TDNFKQLQEQMDV 2417
            |.|.:...:.|      |:..:...|...::.:|::... |..|.|.:.  .|:|......:|:
Mouse   288 LAIMEEKQIILKRQQEEVNRLMNTQKSGSMNFIDMVEGF-KKTLRHTDPMVLDDFSTSLSFIDI 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 152..371 CDD:278921
Ion_trans 705..902 CDD:278921
Ion_trans 1768..2019 CDD:278921
Na_channel_gate 2009..2063 CDD:240441 5/12 (42%)
Ion_trans 2085..2320 CDD:278921 68/245 (28%)
GPHH 2331..2386 CDD:293510 6/60 (10%)
Catsper3NP_001239416.1 Ion_trans 49..269 CDD:366146 71/260 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7403
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.760

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