DRSC/TRiP Functional Genomics Resources

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Protein Alignment NaCP60E and Catsper4

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_001418108.1 Gene:Catsper4 / 362623 RGDID:1565213 Length:448 Species:Rattus norvegicus


Alignment Length:337 Identity:86/337 - (25%)
Similarity:136/337 - (40%) Gaps:90/337 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1751 PAFEWFVLVLIFASSITLCFEDINLDKNKTLKRVLYWINFS-----FCLIFVVEMILKWLALGFS 1810
            |||:..:..|:..::||     |.|..|..|.:..|.: ||     ...|.:.|::|.||. ||.
  Rat    68 PAFQLLLAFLLVTNAIT-----IALRTNSYLGQKHYEL-FSTIDDIVLTILICEVLLGWLN-GFW 125

  Fly  1811 KYFTSFWTILDFIIVFVSVFSLLIEE-NEN-----LKVLRSLRTLRALRPLRAISRWQGMRIVVN 1869
            .::...|.||:|.|||:......|:: ||.     |:.||.:....|:.||..|         :.
  Rat   126 IFWKDGWNILNFAIVFILFMGFFIKQLNETFITYPLRALRLVHVCMAVEPLARI---------IR 181

  Fly  1870 ALMYAIPSIFNVLLVCLVFWLIFSIMGVQFFGGKFFKCVNEMGELLPITEVNDKWDCIEQNYTWI 1934
            .::.::|.:.||:.:.|.|.|:||:.||..||....|                            
  Rat   182 VILQSMPDLANVMALILFFMLVFSVFGVTLFGAFVPK---------------------------- 218

  Fly  1935 NSKITFDHVGMGYLALLQVATFEGWMEVMADAVDARGVDLQPQREANLYAY-----IYFVIFIVC 1994
                .|.::|:....|....|.:||:::..|.          |.|...||.     |||.|||..
  Rat   219 ----HFQNMGVALYTLFICITQDGWLDIYMDF----------QVEEREYAMEVGGAIYFAIFITL 269

  Fly  1995 GSFFTLNLFIGVIIDNF-NMLKKKYEGGVLEMFLTESQK--------------HYYTAMKKLGRK 2044
            |:|..||||:.|:..|. .|:|...|.|.|:. :|.::|              |...|.|:....
  Rat   270 GAFIGLNLFVVVVTTNLEQMMKTGEEEGHLQP-ITFNEKDAEEEDWTDELPLVHCTEARKETSAV 333

  Fly  2045 KPQKVIKRPINH 2056
            ..:.::..|:.:
  Rat   334 PQEPLVGGPLRN 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842
Ion_trans 687..902 CDD:459842
Ion_trans 1751..2019 CDD:459842 77/284 (27%)
Na_channel_gate 2009..2063 CDD:240441 12/63 (19%)
Ion_trans 2067..2320 CDD:459842
GPHH 2332..2378 CDD:465306
Catsper4NP_001418108.1 Ion_trans 79..289 CDD:459842 71/267 (27%)
Blue background indicates that the domain is not in the aligned region.

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