DRSC/TRiP Functional Genomics Resources

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Protein Alignment NaCP60E and Scn1a

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_001300926.1 Gene:Scn1a / 20265 MGIID:98246 Length:2009 Species:Mus musculus


Alignment Length:2555 Identity:814/2555 - (31%)
Similarity:1175/2555 - (45%) Gaps:798/2555 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 PRTKASVEDGDVLPRKFEPFPEHMYGKPLEEIDT-FIYEETFCVVSKRFRKNYIHRFTGTKSLFL 108
            |:..:.:|.|..||..:...|..|..:|||::|. :|.::||.|::|   ...|.||:.|.:|::
Mouse    49 PKPNSDLEAGKNLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNK---GKAIFRFSATSALYI 110

  Fly   109 FYPWSPARRVCVYIATNQFFDYCVMATILFNCIFLAMT---ETVEEAEYIFLAIYSIEMVIKIIA 170
            ..|::|.|::.:.|..:..|...:|.|||.||:|:.|:   :..:..||.|..||:.|.:|||||
Mouse   111 LTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIA 175

  Fly   171 KGFLLNKYTYLRNPWNWLDFVVITSGYATIGMEVGNLAGLRTFRVLRALKTVSIMPGLKTIINAL 235
            :||.|..:|:||:|||||||.|||..|.|..:::||::.||||||||||||:|::||||||:.||
Mouse   176 RGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL 240

  Fly   236 LHSFRQLAEVMTLTIFCLMVFALFALQVYMGELRNKCVRQVPTDWTNVSHT-------------- 286
            :.|.::|::||.||:|||.||||..||::||.||||||:..||:.:...|:              
Mouse   241 IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNITMDYNGTLV 305

  Fly   287 -------DWQIWVNDTDNWLYDEDEL-PVLCGNLTGARHCPFEYVCLCVGENPNHGYTNFDNFMW 343
                   ||:.::.|:....:.|..| .:||||.:.|..||..|:|:..|.|||:|||:||.|.|
Mouse   306 NETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYMCVKAGRNPNYGYTSFDTFSW 370

  Fly   344 SMLTTFQLITLDYWENVYNMVLATCGPMSVSFFTVVVFFGSFYLINLMLAVVALSYEEEAEITNE 408
            :.|:.|:|:|.|:|||:|.:.|...|...:.||.:|:|.||||||||:|||||::|||:.:.|.|
Mouse   371 AFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLE 435

  Fly   409 ERKK---------DLLDHRDD----------STFSFDPSVLNVKKLNKNNKKKIDSRKGVLLASY 454
            |.::         :.|..:.:          |..|.:||.......:.:...|:.|:      |.
Mouse   436 EAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLSDSSSEASKLSSK------SA 494

  Fly   455 SKKKTRRKKTKGGKEGGTNGNGNGSNGDDNKSHSAT-------------------------PSPG 494
            .:::.||||.|..::.|      |...||::.|.:.                         .||.
Mouse   495 KERRNRRKKRKQKEQSG------GEEKDDDEFHKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPH 553

  Fly   495 P----------SPRHSATERPSALTMQAQ-----KQYQQMEQQHKLAKSGSGGSNNPMAPTPKGR 544
            .          |||.::  |.|..:.:.:     .:....:.:|...:......::...|...|.
Mouse   554 QSLLSIRGSLFSPRRNS--RTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGE 616

  Fly   545 ISFQDSGMGVKNPNML--YPSDYK-------GQLIANSGQPSSNSSGVNR--------ESSQDDS 592
            ....:.....::..||  :|::.|       ..:::..|.||..:|.|.:        :.:.||:
Mouse   617 RRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEVIIDKPATDDN 681

  Fly   593 GVVDDHEEQDTTNDMGHVSTVELALSPREVRLIKCNGNIARIKNHNVYALHQEFSSEVVVIDDLP 657
            |...:.|.:...:...|||...|....:..|.:    :||.|..:.|..|.:.            
Mouse   682 GTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAM----SIASILTNTVEELEES------------ 730

  Fly   658 DRNCDRCVH--------W-CTDYESWLQFQNCLYKVVRDPLFELAITLCIVLNTAFLAMEHHGMS 713
            .:.|..|.:        | |:.|  ||:.::.:..||.||..:||||:||||||.|:||||:.|:
Mouse   731 RQKCPPCWYKFSNIFLIWDCSPY--WLKVKHIVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMT 793

  Fly   714 ESFRNALDVGNKVFTSIFTFECIVKLMALSK-DFFLCGWNIFDLLIVTASLLDIIFELVDGLSVL 777
            |.|.:.|.|||.|||.|||.|..:|::|:.. .:|..||||||..|||.||:::....|:|||||
Mouse   794 EHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLANVEGLSVL 858

  Fly   778 RGLRLLRVLKLAQSWTTMKVLLSIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTP--EKF 840
            |..|||||.|||:||.|:.:|:.||.:::||||||||:|.|:::||||:|||||.|.|..  .|.
Mouse   859 RSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKI 923

  Fly   841 DPD-PVPRWNFNDFFHSFMMIFRILCGEWIEPLWDCMRAEEEQGASTCFAIFLPTLVMGNFMVLN 904
            ..| .:|||:.|||||||:::||:|||||||.:||||   |..|.:.|..:|:..:|:||.:|||
Mouse   924 ATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM---EVAGQAMCLTVFMMVMVIGNLVVLN 985

  Fly   905 LFLALLLNSFNSEELKSKKEEVGEESKLARSIERVRDLIRKKRQERKDRKERKFAEKFQQIVLDA 969
            |||||||:||:::.|.:..:: .|.:.|..:::|:...|...:        ||..|..||..:..
Mouse   986 LFLALLLSSFSADNLAATDDD-NEMNNLQIAVDRMHKGIAYVK--------RKIYEFIQQSFVKK 1041

  Fly   970 QQAHAQTLSHQAAVGLERGDKPGVLAETKFHRLSYQESMNRPVSGSDFGFQIPLHDGLHTIVDGL 1034
            |:                     :|.|.|                       ||.|         
Mouse  1042 QK---------------------ILDEIK-----------------------PLDD--------- 1053

  Fly  1035 EYDDTGDLPEQIQLQAHPLPPTSDSMPPTYESAMMATTGGSFSSVNGNGTCQNLTPFVQAERRLQ 1099
                                                        :|                   
Mouse  1054 --------------------------------------------LN------------------- 1055

  Fly  1100 HQISSGVSTQQYDSREEATYTESIELLGQYNSTDTDPYANDQRSGCGSFNRGDSLQDNSSRRYGS 1164
                                                             ||.|:...|.:...| 
Mouse  1056 -------------------------------------------------NRKDNCISNHTTEIG- 1070

  Fly  1165 EEHDEAFLKYQKSLLTRSPSYRKSLDRLSQSSGQSQRSLLKSEEAEMRRHSSGQSLNSMSIEQDE 1229
                                  |.||.|...:|.:...            .:|.|:....|::.:
Mouse  1071 ----------------------KDLDCLKDVNGTTSGI------------GTGSSVEKYIIDESD 1101

  Fly  1230 LLSQQGNLREELLNCDQKELFQFLQEEEELQKGTKLRRISNVMRSRRPSSQMGQPENETMVEHSE 1294
            .:|...|                                        ||..:..|   ..|..|:
Mouse  1102 YMSFINN----------------------------------------PSLTVTVP---IAVGESD 1123

  Fly  1295 FDNI-IQSFEKELEEIKRSTTSLERKLSNLSEPSPAADEATKAIMEHIAIITGASERSAADEVVL 1358
            |:|: .:.|..|        :.||.....|:|.|.:::.:|..|        ||           
Mouse  1124 FENLNTEDFSSE--------SDLEESKEKLNESSSSSEGSTVDI--------GA----------- 1161

  Fly  1359 PLNPYDSYDLSSVPRRSQSVSAAAQRQSVKLKRRSLEKQRKIDEDFSISNEIRKICDQIHAPFVA 1423
                                                                             
Mouse  1162 ----------------------------------------------------------------- 1161

  Fly  1424 MEAMAVAATSASQAQPNQSPFLRRKVDPFTVQFDRFKRLSLIERVEEVPEEEKPISTLRIESEKM 1488
                                                            |.||:|:          
Mouse  1162 ------------------------------------------------PAEEQPV---------- 1168

  Fly  1489 PRKFLHGPDQLRLDSLSLKSTNSYENLLIQKQKLGMATPPAVPATPPTSLKSSIEPPTLAQISSL 1553
                                                                 ||          
Mouse  1169 -----------------------------------------------------IE---------- 1170

  Fly  1554 KTTPPLAALTEHQQHFHATSIQAAPTPAHTHAHSQAHAHSMAGQRRRMEHPQSTLDKAASFQSAR 1618
                                                              |:.||:         
Mouse  1171 --------------------------------------------------PEETLE--------- 1176

  Fly  1619 TESHSSGAADASSALALAMAQKTEQSQSTAPDATQKPSAFTRLTEKPWHCLVSYVDDLTVGGRRN 1683
                                                                             
Mouse  1177 ----------------------------------------------------------------- 1176

  Fly  1684 SQGAYNDPMTFPSYGATKAAKVPDDCFPQKCYDHFYFRCPWFMSC---MDTQSAKHWTRVRTAVL 1745
                                  |:.||.:.|...  |:|     |   ::....|.|..:|....
Mouse  1177 ----------------------PEACFTEGCVQR--FKC-----CQISVEEGRGKQWWNLRRTCF 1212

  Fly  1746 TVVDTPAFEWFVLVLIFASSITLCFEDINLDKNKTLKRVLYWINFSFCLIFVVEMILKWLALGFS 1810
            .:|:...||.|::.:|..||..|.||||.:|:.||:|.:|.:.:..|..||::||:|||:|.|:.
Mouse  1213 RIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGYQ 1277

  Fly  1811 KYFTSFWTILDFIIVFVSVFSLLIEE--NENLKVLRSLRTLRALRPLRAISRWQGMRIVVNALMY 1873
            .|||:.|..|||:||.||:.||....  ...|..::|||||||||||||:||::|||:|||||:.
Mouse  1278 TYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLG 1342

  Fly  1874 AIPSIFNVLLVCLVFWLIFSIMGVQFFGGKFFKCVN-EMGELLPITEVNDKWDC---IEQNYT-- 1932
            |||||.|||||||:||||||||||..|.|||:.||| ..|::..|:|||:..||   ||:|.|  
Mouse  1343 AIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGDIFEISEVNNHSDCLKLIERNETAR 1407

  Fly  1933 WINSKITFDHVGMGYLALLQVATFEGWMEVMADAVDARGVDLQPQREANLYAYIYFVIFIVCGSF 1997
            |.|.|:.||:||.|||:|||||||:|||::|..|||:|.|:|||:.|.:||.|:||||||:.|||
Mouse  1408 WKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSF 1472

  Fly  1998 FTLNLFIGVIIDNFNMLKKKYEGGVLEMFLTESQKHYYTAMKKLGRKKPQKVIKRPINHFLAMFY 2062
            |||||||||||||||..|||:.|  .::|:||.||.||.||||||.|||||.|.||.|.|..|.:
Mouse  1473 FTLNLFIGVIIDNFNQQKKKFGG--QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVF 1535

  Fly  2063 DLSNSRRFEIAIFVLIFLNMLTMGIEHYDQPHAVFFILEVSNAFFTTVFGLEAIVKIVGLRYHYF 2127
            |....:.|:|:|.:||.|||:||.:|..||...|..||...|..|..:|..|.::|::.||::||
Mouse  1536 DFVTRQVFDISIMILICLNMVTMMVETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYF 1600

  Fly  2128 TVPWNVFDFLLVLASIFGILMEDIMIDLPISPTLLRVVRVFRIGRILRLIKAAKGIRKLLFALVV 2192
            |:.||:|||::|:.||.|:.:.:::....:||||.||:|:.||||||||||.|||||.|||||::
Mouse  1601 TIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMM 1665

  Fly  2193 SLPALFNIGALLGLITFIYAILGMSLFGNVKLQGALDDMVNFQTFGRSMQLLFRLMTSAGWNDVL 2257
            |||||||||.||.|:.|||||.|||.|..||.:..:|||.||:|||.||..||::.|||||:.:|
Mouse  1666 SLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLL 1730

  Fly  2258 ESLM-IQPPDCDPFIHGHTN------GNCGHPLLAITYFTSFIIISYMIVINMYIAIILENFNQA 2315
            ..:: .:||||||   ...|      |:||:|.:.|.:|.|:||||:::|:|||||:|||||:.|
Mouse  1731 APILNSKPPDCDP---NKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVA 1792

  Fly  2316 HQEEEIGIVEDDLEMFYIRWSKYDPHATQFIHFSQLSDFIASLDPPLGISKPNNVALVSFNLPIS 2380
            .:|....:.|||.||||..|.|:||.||||:.|.:||.|.|:|:|||.:.:||.:.|::.:||:.
Mouse  1793 TEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMV 1857

  Fly  2381 KGNKIHCLDILHALVKHVLGHVEETDNFKQLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQEKAA 2445
            .|::|||||||.|..|.|||...|.|   .|:.||:.:|....|::...:.:::|...|::|.:|
Mouse  1858 SGDRIHCLDILFAFTKRVLGESGEMD---ALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSA 1919

  Fly  2446 KTIQTGWKEYLRRKREKERS 2465
            ..||..::.:|.::..|:.|
Mouse  1920 VIIQRAYRRHLLKRTVKQAS 1939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842 123/270 (46%)
Ion_trans 687..902 CDD:459842 119/218 (55%)
Ion_trans 1751..2019 CDD:459842 163/275 (59%)
Na_channel_gate 2009..2063 CDD:240441 32/53 (60%)
Ion_trans 2067..2320 CDD:459842 134/259 (52%)
GPHH 2332..2378 CDD:465306 21/45 (47%)
Scn1aNP_001300926.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..60 3/10 (30%)
I. /evidence=ECO:0000250|UniProtKB:P04774 110..454 151/343 (44%)
Ion_trans 127..433 CDD:459842 143/305 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 455..528 17/84 (20%)
Na_trans_cytopl 555..718 CDD:463401 27/168 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 584..627 3/42 (7%)
II. /evidence=ECO:0000250|UniProtKB:P04774 750..1022 141/277 (51%)
Ion_trans 767..980 CDD:459842 117/215 (54%)
Na_trans_assoc 1006..1213 CDD:461936 69/824 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1129..1163 11/173 (6%)
III. /evidence=ECO:0000250|UniProtKB:P04774 1200..1514 178/315 (57%)
Ion_trans 1217..1492 CDD:459842 161/274 (59%)
Na_channel_gate 1484..1536 CDD:240441 32/53 (60%)
IV. /evidence=ECO:0000250|UniProtKB:P04774 1523..1821 153/300 (51%)
Ion_trans 1540..1796 CDD:459842 133/258 (52%)
S1-S2 loop of repeat IV. /evidence=ECO:0000269|PubMed:27281198 1561..1571 4/9 (44%)
S3b-S4 loop of repeat IV. /evidence=ECO:0000269|PubMed:27281198 1619..1636 4/16 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1984..2009
Blue background indicates that the domain is not in the aligned region.

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