DRSC/TRiP Functional Genomics Resources

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Protein Alignment NaCP60E and Cacna1s

DIOPT Version :10

Sequence 1:NP_001261172.1 Gene:NaCP60E / 37981 FlyBaseID:FBgn0085434 Length:2896 Species:Drosophila melanogaster
Sequence 2:NP_001074492.1 Gene:Cacna1s / 12292 MGIID:88294 Length:1852 Species:Mus musculus


Alignment Length:2870 Identity:560/2870 - (19%)
Similarity:944/2870 - (32%) Gaps:1238/2870 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 KSLFLFYPWSPARRVCVYIATNQFFDYCVMATILFNC----IFLAMTET--------VEEAEYIF 156
            ::||.....:|.|:.|:.|...:.|:..::.||..||    ::|.|.|.        :|:.||.|
Mouse    29 RALFCLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPEDDNNTLNLGLEKLEYFF 93

  Fly   157 LAIYSIEMVIKIIAKGFLLNKYTYLRNPWNWLDFVVITSGYATIGMEVGNL------------AG 209
            |.::|||..:||||.|||.::..|||:.||.|||:::..|..|:.:|..|:            ||
Mouse    94 LIVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTVILEQVNIIQTNTAPMSSKGAG 158

  Fly   210 -----LRTFRVLRALKTVSIMPGLKTIINALLHSFRQLAEVMTLTIFCLMVFALFALQVYMGELR 269
                 ||.|||||.|:.||.:|.|:.::|::..:...|..:..|.:|.::::|:..|:::.|::.
Mouse   159 LDVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVIIYAIIGLELFKGKMH 223

  Fly   270 NKCVRQVPTDWTNVSHTDWQIWVNDTDNWLYDEDELPVLCGNLTGARHCPFE-YVCLCVGENPNH 333
            ..|                  :...||.....|:|.|..|......|.|... ..|......|||
Mouse   224 KTC------------------YFIGTDIVATVENEKPSPCARTGSGRPCTINGSECRGGWPGPNH 270

  Fly   334 GYTNFDNFMWSMLTTFQLITLDYWENVYNMVLATCG---PMSVSFFTVVVFFGSFYLINLMLAVV 395
            |.|:||||.:||||.:|.|:::.|.:|...|....|   |.  .:|..::..|||:::||:|   
Mouse   271 GITHFDNFGFSMLTVYQCISMEGWTDVLYWVNDAIGNEWPW--IYFVTLILLGSFFILNLVL--- 330

  Fly   396 ALSYEEEAEITNEERKKDLLDHRDDSTFSFDPSVLNVKKLNKNNKKKIDSRKGVLLASYSKKKTR 460
                                                                |||...::|::.:
Mouse   331 ----------------------------------------------------GVLSGEFTKEREK 343

  Fly   461 RKKTKGGKEGGTNGNGNGSNGDDNKSHSATPSPGPSPRHSATERPSALTMQAQKQYQQMEQQHKL 525
            .|                |.|                           |.|..::.||:|:    
Mouse   344 AK----------------SRG---------------------------TFQKLREKQQLEE---- 361

  Fly   526 AKSGSGGSNNPMAPTPKGRISFQDSGMGVKNPNMLYPSDYKGQLIANSGQPSSNSSGVNRESSQD 590
                                                  |.:|.:           |.:.:....|
Mouse   362 --------------------------------------DLRGYM-----------SWITQGEVMD 377

  Fly   591 DSGVVDDHEEQDTTNDMGHVSTVELALSPREVRLIKCNGNIARIKNHNVYALHQEFSSEVVVIDD 655
                |||..|...:.|.|...|..|                     :.:..|::       :|..
Mouse   378 ----VDDLREGKLSLDEGGSDTESL---------------------YEIEGLNK-------IIQF 410

  Fly   656 LPD-RNCDRCVHW-CTDYESWLQFQNCLYKVVRDPLFELAITLCIVLNTAFLAMEHHGMSESFRN 718
            :.. |..:|...| |.|             :|:..:|...:.|.:.|||..:|.|||.......:
Mouse   411 IRHWRQWNRVFRWKCHD-------------LVKSKVFYWLVILIVALNTLSIASEHHNQPLWLTH 462

  Fly   719 ALDVGNKVFTSIFTFECIVKLMALS-KDFFLCGWNIFDLLIVTASLLDIIFELVD-------GLS 775
            ..||.|:|..::||.|.::|:..|. :.:|:..:|.||..:|.:.:|:|:  ||:       |:|
Mouse   463 LQDVANRVLLTLFTIEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGILEIL--LVESGAMSPLGIS 525

  Fly   776 VLRGLRLLRVLKLAQSWTTMKVLLSIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTPEKF 840
            |||.:||||:.|:.:.||::..|::.::::|.::.:|.|:|.:.|.|||::|||||...|   .|
Mouse   526 VLRCIRLLRLFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIIIFALLGMQLFGGRY---DF 587

  Fly   841 DPDPVPRWNFNDFFHSFMMIFRILCGE-WIEPLWDCMRA---EEEQGASTCFAIFLPTLVMGNFM 901
            :...|.|.||::|..:.:.:|::|.|| |...:::.:.|   ....|...|. .|:...|.||::
Mouse   588 EDTEVRRSNFDNFPQALISVFQVLTGEDWNSVMYNGIMAYGGPTYPGVLVCI-YFIILFVCGNYI 651

  Fly   902 VLNLFLALLL-NSFNSEELKSKKEEVGEESKLARSIERVRDLIRKKRQERKDRKERKFAEKFQQI 965
            :||:|||:.: |...:|.|.|.:                    :.|.:|||.||           
Mouse   652 LLNVFLAIAVDNLAEAESLTSAQ--------------------KAKAEERKRRK----------- 685

  Fly   966 VLDAQQAHAQTLSHQAAVGLERGDKPGVLAETKFHRLSYQESMNRPVSGSDFGFQIPLHDGLHTI 1030
                               :.:|                                          
Mouse   686 -------------------MSKG------------------------------------------ 689

  Fly  1031 VDGLEYDDTGDLPEQIQLQAHPLPPTSDSMPPTYESAMMATTGGSFSSVNGNGTCQNLTPFVQAE 1095
                                  ||..|:                                     
Mouse   690 ----------------------LPDKSE------------------------------------- 695

  Fly  1096 RRLQHQISSGVSTQQYDSREEATYTESIELLGQYNSTDTDPYANDQRSGCGSFNRGDSLQDNSSR 1160
                              .|.||.|                                        
Mouse   696 ------------------EERATVT---------------------------------------- 702

  Fly  1161 RYGSEEHDEAFLKYQKSLLTRSPSYRKSLDRLSQSSGQSQRSLLKSEEAEMRRHSSGQSLNSMSI 1225
                                      |.|::.|:..|....:.||.:|                 
Mouse   703 --------------------------KKLEQKSKGEGIPTTAKLKIDE----------------- 724

  Fly  1226 EQDELLSQQGNLREELLNCDQKELFQFLQEEEELQKGTKLRRISNVMRSRRPSSQMGQPENETMV 1290
                                                                             
Mouse   725 ----------------------------------------------------------------- 724

  Fly  1291 EHSEFDNIIQSFEKELEEIKRSTTSLERKLSNLSEPSPAADEATKAIMEHIAIITGASERSAADE 1355
                       ||..:.|:|              :|.|:||            ..|..|.   ||
Mouse   725 -----------FESNVNEVK--------------DPYPSAD------------FPGDDEE---DE 749

  Fly  1356 VVLPLNPYDSYDLSSVPRRSQSVSAAAQRQSVKLKRRSLEKQRKIDEDFSISNEIRKICDQIHAP 1420
            ..:|::|                                                          
Mouse   750 PEIPVSP---------------------------------------------------------- 756

  Fly  1421 FVAMEAMAVAATSASQAQPNQSPFLRRKVDPFTVQFDRFKRLSLIERVEEVPEEEKPISTLRIES 1485
                                                                 ..:|::.|::  
Mouse   757 -----------------------------------------------------RPRPLAELQL-- 766

  Fly  1486 EKMPRKFLHGPDQLRLDSLSLKSTNSYENLLIQKQKLGMATPPAVPATPPTSLKSSIEPPTLAQI 1550
                                             |:|                             
Mouse   767 ---------------------------------KEK----------------------------- 769

  Fly  1551 SSLKTTPPLAALTEHQQHFHATSIQAAPTPAHTHAHSQAHAHSMAGQRRRMEHPQSTLDKAASFQ 1615
                                     |.|.|                                   
Mouse   770 -------------------------AVPIP----------------------------------- 774

  Fly  1616 SARTESHSSGAADASSALALAMAQKTEQSQSTAPDATQKPSAFTRLTEKPWHCLVSYVDDLTVGG 1680
                        :|||                                                 
Mouse   775 ------------EASS------------------------------------------------- 778

  Fly  1681 RRNSQGAYNDPMTFPSYGATKAAKVPDDCFPQKCYDHFYFRCPWFMSCMDTQSAKHWTRVRTAVL 1745
                                                 |:...|             ..::|....
Mouse   779 -------------------------------------FFIFSP-------------TNKIRVLCH 793

  Fly  1746 TVVDTPAFEWFVLVLIFASSITLCFED-INLDKNKTLKRVLYWINFSFCLIFVVEMILKWLALGF 1809
            .:|:...|..|:|:.|..||..|..|| |..|..:  .::|.:.::.|..:|.||::||....|.
Mouse   794 RIVNATWFTNFILLFILLSSAALAAEDPIRADSMR--NQILEYFDYVFTAVFTVEIVLKMTTYGA 856

  Fly  1810 ----SKYFTSFWTILDFIIVFVSVFSLLIEENENLKVLRSLRTLRALRPLRAISRWQGMRIVVNA 1870
                ..:..:::.|||.::|.||:.|:.:|.:. :.|::.||.||.|||||||:|.:|::.||..
Mouse   857 FLHKGSFCRNYFNILDLLVVAVSLISMGLESSA-ISVVKILRVLRVLRPLRAINRAKGLKHVVQC 920

  Fly  1871 LMYAIPSIFNVLLVCLVFWLIFSIMGVQFFGGKFFKCVNEMGELLPITEVNDKWDCIEQNY---- 1931
            :..||.:|.|::||..:...:|:.:|||.|.|||:.|    .:|..:||.    :|....|    
Mouse   921 VFVAIRTIGNIVLVTTLLQFMFACIGVQLFKGKFYSC----NDLSKMTEE----ECRGYYYIYKD 977

  Fly  1932 -----------TWINSKITFDHVGMGYLALLQVATFEGWMEVMADAVDARGVDLQPQREANLYAY 1985
                       .||::...||:|....::|..|:|||||.:::..|:|:...|..|.....:...
Mouse   978 GDPTQIELRPRQWIHNDFHFDNVLSAMMSLFTVSTFEGWPQLLYKAIDSNEEDTGPVYNNRVEMA 1042

  Fly  1986 IYFVIFIVCGSFFTLNLFIGVIIDNFNMLKKKYEGGVLEMFLTESQKHYYTAMKKLGRKKPQK-- 2048
            |:|:|:|:..:||.:|:|:|.:|..|.      |.|..|....|..|:....::...:.:|.:  
Mouse  1043 IFFIIYIILIAFFMMNIFVGFVIVTFQ------EQGETEYKNCELDKNQRQCVQYALKARPLRCY 1101

  Fly  2049 VIKRPINHFLAMFYDLSNSRRFEIAIFVLIFLNMLTMGIEHYDQPHAVFFILEVSNAFFTTVFGL 2113
            :.|.|..:  .::|.:::| .||..:|.||.||.:.:|::||:|...:..|.::.|..||.:|.|
Mouse  1102 IPKNPYQY--QVWYVVTSS-YFEYLMFALIMLNTICLGMQHYNQSEQMNHISDILNVAFTIIFTL 1163

  Fly  2114 EAIVKIVGLRYH-YFTVPWNVFDFLLVLASIFGILMEDIMIDLPISPTL---------------L 2162
            |.::|::..:.. ||..||||||||:|:.||..:::.:|...|..|..|               .
Mouse  1164 EMVLKLIAFKPRGYFGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESA 1228

  Fly  2163 RV----VRVFRIGRILRLIKAAKGIRKLLFALVVSLPALFNIGALLGLITFIYAILGMSLFGNVK 2223
            |:    .|:||:.|:::|:..|:|:|.||:..:.|..||..:..|:.::.||||::||.:||.:.
Mouse  1229 RISSAFFRLFRVMRLVKLLNRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIA 1293

  Fly  2224 LQGA--LDDMVNFQTFGRSMQLLFRLMTSAGWNDVLESLMIQPPDCDP---FIHG--HTNGNCGH 2281
            :...  ::...|||||.:::.||||..|...|.::|.:...... |||   :..|  ||   || 
Mouse  1294 MVDGTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKL-CDPESDYAPGEEHT---CG- 1353

  Fly  2282 PLLAITYFTSFIIISYMIVINMYIAIILENFNQAHQEEEIGIVEDDLEMFYIRWSKYDPHATQFI 2346
            ...|..||.||.::...::||:::|:|::||:...::..| :....|:.|...|::|||.|...|
Mouse  1354 TNFAYYYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSI-LGPHHLDEFKAIWAEYDPEAKGRI 1417

  Fly  2347 HFSQLSDFIASLDPPLGISK--PNNVA---LVSFNLPISKGNKIHCLDILHALVKHVLGHVEETD 2406
            ....:...:..:.||||..|  |:.||   ||..|:|::....:.....|.|||:..| .::...
Mouse  1418 KHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTAL-KIKTEG 1481

  Fly  2407 NFKQLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQEK---------------------AAKTIQT 2450
            ||:|..|::....||               ||||...                     |...||.
Mouse  1482 NFEQANEELRAIIKK---------------IWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQE 1531

  Fly  2451 GWKEYLRRKREKERSNSGDSATQTSSPGGWQSKLSALNFFHLQVSRRGTACSSRASSRKSSRASD 2515
            .::::::|:.|..               |::.|...:   .:|...|                  
Mouse  1532 HFRKFMKRQEEYY---------------GYRPKKDTV---QIQAGLR------------------ 1560

  Fly  2516 ASDLSELAGPWLNLPLMLVSG----ADEVVKDIKQQNDELG---KRGSIFVEA-----------P 2562
              .:.|.|.|.::   ..:||    .:|:.:.:.:...|.|   :.|.:|.:.           |
Mouse  1561 --TIEEEAAPEIH---RAISGDLTAEEELERAMVEAAMEEGIFRRTGGLFGQVDNFLERTNSLPP 1620

  Fly  2563 RASRRR--SFYNFFLRHQDA---VDDSLTSPSVHRKTAMNNTTNTTSNSASTSGTAS-------- 2614
            ..:.:|  .|....:...::   ::|...:|..| ..|..||.|..:|.|  .|.:|        
Mouse  1621 VMANQRPLQFAEIEMEELESPVFLEDFPQNPGTH-PLARANTNNANANVA--YGNSSHRNNPVFS 1682

  Fly  2615 ---------STATAPATGCGPAATSASDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSA 2670
                     ..|..|.|..||.:.....|..|         ||......  |:|..:||:     
Mouse  1683 SICYEREFLGEADMPVTREGPLSQPCRASGPH---------SRSHVDKL--KRPMTQRGM----- 1731

  Fly  2671 LRVNKNAFVSEASAPEVIVTRPSPEQQT-----HPHSLSLRPDNATLVHVLVHRESEEYKEEDE- 2729
                     .|...|      |||.|.|     ||.....:...:..:.....|..||:...:. 
Mouse  1732 ---------PEGQVP------PSPCQVTGAKAEHPVQKEGKGPTSRFLETPNSRNFEEHVPRNSA 1781

  Fly  2730 ---SSPS---------VSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS- 2781
               ::|:         |.|       |||.|:..  ....:.||  ::..|.|.|...::.|.: 
Mouse  1782 HRCTAPATAMLIQEALVRG-------GLDSLAAD--ANFVMATG--QALADACQMEPEEVEVAAT 1835

  Fly  2782 ---PKDPPRG 2788
               .::.|.|
Mouse  1836 ELLKQESPEG 1845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NaCP60ENP_001261172.1 Ion_trans 125..371 CDD:459842 85/278 (31%)
Ion_trans 687..902 CDD:459842 72/226 (32%)
Ion_trans 1751..2019 CDD:459842 90/287 (31%)
Na_channel_gate 2009..2063 CDD:240441 9/55 (16%)
Ion_trans 2067..2320 CDD:459842 91/279 (33%)
GPHH 2332..2378 CDD:465306 17/50 (34%)
Cacna1sNP_001074492.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
I. /evidence=ECO:0000305 38..337 100/373 (27%)
Ion_trans 50..345 CDD:459842 97/369 (26%)
Selectivity filter of repeat I. /evidence=ECO:0000250|UniProtKB:P07293 290..293 0/2 (0%)
Binding to the beta subunit. /evidence=ECO:0000269|PubMed:28351836 357..374 6/69 (9%)
II. /evidence=ECO:0000305 418..664 82/264 (31%)
Ion_trans 431..672 CDD:459842 80/246 (33%)
Selectivity filter of repeat II. /evidence=ECO:0000250|UniProtKB:P07293 612..615 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 675..712 17/251 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 731..757 12/165 (7%)
III. /evidence=ECO:0000305 768..1068 100/510 (20%)
Ion_trans 798..1075 CDD:459842 92/293 (31%)
Dihydropyridine binding. /evidence=ECO:0000250|UniProtKB:P07293 988..1077 30/94 (32%)
Selectivity filter of repeat III. /evidence=ECO:0000250|UniProtKB:P07293 1012..1015 2/2 (100%)
IV. /evidence=ECO:0000305 1105..1384 91/286 (32%)
Ion_trans 1117..1392 CDD:459842 91/280 (33%)
Selectivity filter of repeat IV. /evidence=ECO:0000250|UniProtKB:P07293 1321..1324 1/2 (50%)
Dihydropyridine binding. /evidence=ECO:0000250|UniProtKB:P07293 1337..1403 21/71 (30%)
Phenylalkylamine binding. /evidence=ECO:0000250 1349..1392 15/46 (33%)
Phenylalkylamine binding. /evidence=ECO:0000250|UniProtKB:P07293 1349..1391 15/45 (33%)
GPHH 1401..1454 CDD:465306 18/52 (35%)
Ca_chan_IQ 1464..1536 CDD:462591 18/87 (21%)
Interaction with calmodulin. /evidence=ECO:0000250|UniProtKB:Q13698 1522..1542 4/19 (21%)
CAC1F_C 1557..1840 CDD:465298 63/350 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1702..1721 6/27 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1727..1762 11/54 (20%)
Blue background indicates that the domain is not in the aligned region.

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