DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dll and Nanog

DIOPT Version :10

Sequence 1:NP_001137759.1 Gene:Dll / 37973 FlyBaseID:FBgn0000157 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_082292.1 Gene:Nanog / 71950 MGIID:1919200 Length:305 Species:Mus musculus


Alignment Length:299 Identity:76/299 - (25%)
Similarity:108/299 - (36%) Gaps:99/299 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 GFPSPRSALGYPFPPMHQNSYSG--------YHLGSY---------------------------- 92
            |.|.|.|     .|...:.|.||        :|..:|                            
Mouse     4 GLPGPHS-----LPSSEEASNSGNASSMPAVFHPENYSCLQGSATEMLCTEAASPRPSSEDLPLQ 63

  Fly    93 -APPCASPPKDDFSI--SDK-CEDSGLRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPE 153
             :|..::.||...|.  :|| .|:...:|..:.:||   ||::|..||..|..|||:.:||:|.:
Mouse    64 GSPDSSTSPKQKLSSPEADKGPEEEENKVLARKQKM---RTVFSQAQLCALKDRFQKQKYLSLQQ 125

  Fly   154 RAELAASLGLTQTQVKIWFQNRRSKYKKMMKAAQGPGTNSGMPLGGGGP--NPGQHSPNQMHSGE 216
            ..||::.|.|:..|||.||||:|.|.|:..| .|...|::|:...|..|  .|..|.  ....|.
Mouse   126 MQELSSILNLSYKQVKTWFQNQRMKCKRWQK-NQWLKTSNGLIQKGSAPVEYPSIHC--SYPQGY 187

  Fly   217 LANGRFLWAALETNGTLALVHSTGGNNGGGSNSGSPSHYLPPGHSPTPSSTPVSELSPEFPPTGL 281
            |.|         .:|:|::..|....|                  ||.||           .|..
Mouse   188 LVN---------ASGSLSMWGSQTWTN------------------PTWSS-----------QTWT 214

  Fly   282 SPPTQAPWDQK----PHWIDHKPPPQMTPQPPHPAATLH 316
            :|    .|:.:    |.|.......|.....|..||.||
Mouse   215 NP----TWNNQTWTNPTWSSQAWTAQSWNGQPWNAAPLH 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DllNP_001137759.1 Homeodomain 125..181 CDD:459649 25/55 (45%)
NanogNP_082292.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30 8/30 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..95 8/48 (17%)
Sufficient for interaction with SALL4. /evidence=ECO:0000269|PubMed:16840789 96..155 28/61 (46%)
Homeodomain 98..153 CDD:459649 27/57 (47%)
Required for DNA-binding. /evidence=ECO:0000250|UniProtKB:Q9H9S0 123..152 14/28 (50%)
PTZ00395 <190..>250 CDD:185594 20/102 (20%)
10 X repeats starting with a Trp in each unit 198..247 14/81 (17%)
Sufficient for transactivation activity 198..247 14/81 (17%)
Sufficient for strong transactivation activity 248..305 2/2 (100%)

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