DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dll and shox2

DIOPT Version :10

Sequence 1:NP_001137759.1 Gene:Dll / 37973 FlyBaseID:FBgn0000157 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_957490.1 Gene:shox2 / 394171 ZFINID:ZDB-GENE-040426-1457 Length:299 Species:Danio rerio


Alignment Length:204 Identity:50/204 - (24%)
Similarity:67/204 - (32%) Gaps:64/204 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 KMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMKAAQ 187
            |.|:.||.::..||.:|.|.|..|.|.....|.||:..|||::.:|::||||||:|.:|      
Zfish   107 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK------ 165

  Fly   188 GPGTNSGMPLGGGGPNPGQHSPNQMHSGELANGRFLWAALETNGTLALVHSTGGNNGGGSNSGSP 252
                                ..||:|.|.|......:.|...                       
Zfish   166 --------------------QENQLHKGVLIGAASQFEACRV----------------------- 187

  Fly   253 SHYLPPGHSPTPSSTPVSELSPEFPPTGLSPPTQAPWDQ---------KPHWIDHKPPPQMTPQP 308
            :.|:..|....|..   .:.....||.......|...|.         ..|...| .|..|.|.|
Zfish   188 APYVNVGALRMPFQ---QDSHCNVPPFSFQVQAQLQLDSAVAHAHHHLHSHLAAH-APYMMFPAP 248

  Fly   309 PH--PAATL 315
            |.  |.|||
Zfish   249 PFGLPLATL 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DllNP_001137759.1 Homeodomain 125..181 CDD:459649 24/55 (44%)
shox2NP_957490.1 Homeodomain 109..165 CDD:459649 24/55 (44%)
OAR 278..295 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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