Protein Alignment Dll and Hoxc5

DIOPT Version :10

• Sequence 1: NP_001137759.1
• Gene: Dll / 37973
• FlyBaseID: FBgn0000157
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 186
• Identity: 52/186 - (27%)
• Similarity: 75/186 - (40%)
• Gaps: 46/186 - (24%)

  Fly     4 PDAP-----HTPKYMDGGNTAASVTPGINIPGKSAFVELQQHAAAGYGGIRSTYQHFGPQGGQDS 63
            ||.|     ..|.:..|.:.||.:.||: ...|:|...|::.|.:. |.|:...    .|.||.:
  Rat    71 PDRPACSAAAAPGHALGRDEAAPLNPGM-YSQKAARPALEERAKSS-GEIKEEQ----AQTGQPA 129

  Fly    64 GFPSPRSALGYPFPPMHQNSYSGYHLGSYAPPCASPPKDDFSISDKCEDSGLRVNGKGKKMRKPR 128
            |...|      |.||......:..|:..                   |..|          ::.|
  Rat   130 GLSQP------PAPPQIYPWMTKLHMSH-------------------ETDG----------KRSR 159

  Fly   129 TIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 184
            |.|:..|..:|.:.|...:||....|.|:|.:|.|.:.|:||||||||.|:||..|
  Rat   160 TSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dll	NP_001137759.1	Homeodomain	125..181	CDD:459649	23/55 (42%)
Hoxc5	NP_001101586.1	Homeodomain	156..212	CDD:459649	23/55 (42%)