Protein Alignment Dll and Cdx4

DIOPT Version :10

• Sequence 1: NP_001137759.1
• Gene: Dll / 37973
• FlyBaseID: FBgn0000157
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 273
• Identity: 80/273 - (29%)
• Similarity: 110/273 - (40%)
• Gaps: 77/273 - (28%)

  Fly     7 PHTPKYMDGGNTAASVTPGINIPGKSAFVELQQHAAA-------GYGGIRSTYQHFGPQGG---- 60
            |.|.:...||:||...|.|    |..:.:......||       ||..:.:...| ||..|
  Rat    15 PGTLRNPGGGSTAGVGTSG----GSGSPLPASNFTAAPVYPHYMGYPHMSNMDPH-GPSLGAWSS 74

  Fly    61 ------QD-SGFPSPRSALG-YPFPPMHQNS-------YS---------GYHLGSYAPPCASPPK 101
                  :| |.:|.|.|.:| .|...|..:|       ||         |...|...|..||  :
  Rat    75 PYSPPREDWSTYPGPSSTMGTVPMNDMTSSSPAFGSPDYSTLGPTGGAGGASNGGSLPDAAS--E 137

  Fly   102 DDFSISDKCEDSG----------------------LRVNGKGKKMRKPRTIYSSLQLQQLNRRFQ 144
            ...||     |||                      ::|.||.:...|.|.:|:..|..:|.:.|.
  Rat   138 SLVSI-----DSGTSGGATSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFH 197

  Fly   145 RTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMKAAQGPGTNSGMPLGGGGPNPGQHSP 209
            ..:|:.:..::|||.:|||::.||||||||||:|.:||:|.......|||   |....:.|..||
  Rat   198 CNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSG---GSVQSDSGSISP 259

  Fly   210 NQMHSGELANGRF 222
                 |||.|..|
  Rat   260 -----GELPNAFF 267

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dll	NP_001137759.1	Homeodomain	125..181	CDD:459649	24/55 (44%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	40/170 (24%)
		Homeodomain	179..234	CDD:459649	24/54 (44%)