DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dll and Alx4

DIOPT Version :10

Sequence 1:NP_001137759.1 Gene:Dll / 37973 FlyBaseID:FBgn0000157 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001100023.1 Gene:Alx4 / 296511 RGDID:1310201 Length:399 Species:Rattus norvegicus


Alignment Length:385 Identity:88/385 - (22%)
Similarity:137/385 - (35%) Gaps:141/385 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 APDAPHTP-----------KYMDGGN-------TAASVTPGI-NIPGKSAFVELQQHAAA---GY 45
            |.||.::|           :...||:       :||:...|. :..|::.:...||..||   ..
  Rat    16 AMDAYYSPVSQSREGSSPFRGFPGGDKFGTTFLSAAAKGQGFGDAKGRARYGAGQQDLAAPLESN 80

  Fly    46 GGIRSTYQHFGPQGGQDSGFPSPRSALGYPFPPMH-----------------QNSYSGYHLGSYA 93
            .|.|.::..|.||.      |:|:.....|.||.|                 ....||.|..:..
  Rat    81 AGARGSFNKFQPQP------PTPQPPPAPPAPPAHLYLQRGACKTPPDGSLKLQEGSGGHNAALQ 139

  Fly    94 PPCAS----------PP------KDDFSISDKCEDSGLR-------------------VNGKGKK 123
            .||.:          ||      .|:..:|.|  ::|.:                   .:.||||
  Rat   140 VPCYAKESNLGEPELPPDSEPVGMDNSYLSVK--ETGAKGPQDRAGAEIPSPLEKTDSESSKGKK 202

  Fly   124 MRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKK------M 182
             |:.||.::|.||::|.:.||:|.|..:..|.:||....||:.:|::||||||:|::|      |
  Rat   203 -RRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQM 266

  Fly   183 MKAAQGPGTNSGMPLGGGGPNPGQ-HSPNQMHSGELANGRFLWAALETNGTLALVHSTGGNNGGG 246
            .:......|...:||.....|..| .:|:             |.               ||||..
  Rat   267 QQVRTHFSTAYELPLLTRAENYAQIQNPS-------------WI---------------GNNGAA 303

  Fly   247 SNSGS--------PSHYLPPGHSPTPSSTPVSE---------------LSPEFPPTGLSP 283
            |...:        |:...|..|.|...::.||:               :...|...|:||
  Rat   304 SPVPACVVPCDPVPACMSPHAHPPGSGASSVSDFLSVSGAGSHVGQTHMGSLFGAAGISP 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DllNP_001137759.1 Homeodomain 125..181 CDD:459649 24/55 (44%)
Alx4NP_001100023.1 Homeodomain 203..259 CDD:459649 24/55 (44%)
OAR 375..393 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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