Protein Alignment Dll and Hoxd1

DIOPT Version :10

• Sequence 1: NP_001137759.1
• Gene: Dll / 37973
• FlyBaseID: FBgn0000157
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 287
• Identity: 79/287 - (27%)
• Similarity: 97/287 - (33%)
• Gaps: 108/287 - (37%)

  Fly     4 PDAPHTPKYMDGGNTAASVTPGINIPGKSAFVE-LQQHAAAGYGGIRSTYQHFGP---------Q 58
            |..|..|....|...|||......:.|  |:.. ....:||.||.:.|     ||         :
  Rat    66 PSPPVAPAQPPGPQPAASRYAPCTLEG--AYERGAAPASAAEYGFLGS-----GPAFDFPGALGR 123

  Fly    59 GGQDSG----------FPSPRSAL--GY----------PFPPMHQNSYSGYHLGSY--------- 92
            ...|||          |.|..|.|  |.          |||...:....| |.|.:
  Rat   124 AADDSGPHVHYATSAVFSSGGSFLLSGQVDFAAFAEPGPFPACLKEPADG-HPGPFQTVSPAPGA 187

  Fly    93 APPCASPPKDDFSISDKCEDSGL----------RVNGKGKKMRK--------P----RTIYSSLQ 135
            .|..|||            .|||          :|.....|..|        |    ||.:|:.|
  Rat   188 CPKPASP------------TSGLPAAHSTFEWMKVKRNAPKKSKLSEYGATSPSSAIRTNFSTKQ 240

  Fly   136 LQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKK-----------MMKAAQGP 189
            |.:|.:.|...:||....|.|:|..|.|..|||||||||||.|.||           .:.:.|.|
  Rat   241 LTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVASLQLP 305

  Fly   190 GT-----NSGMPLGGGGPNPGQHSPNQ 211
            |:     .||..||         ||:|
  Rat   306 GSETSPIKSGRNLG---------SPSQ 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dll	NP_001137759.1	Homeodomain	125..181	CDD:459649	28/67 (42%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	42/125 (34%)
		Homeodomain	233..286	CDD:459649	26/52 (50%)