DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dll and Hoxd13

DIOPT Version :10

Sequence 1:NP_001137759.1 Gene:Dll / 37973 FlyBaseID:FBgn0000157 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_032301.2 Gene:Hoxd13 / 15433 MGIID:96205 Length:339 Species:Mus musculus


Alignment Length:200 Identity:58/200 - (28%)
Similarity:83/200 - (41%) Gaps:40/200 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 APH-------TPKYMDGGNTAASVTPGINIPGKSAFVELQQHAAAGYGGIRSTYQHFGPQGGQDS 63
            :||       ..||||....|:|..|...:|.::..|..       |.|..|.|||.       .
Mouse   150 SPHASLGGFPVEKYMDVSGLASSSVPTNEVPARAKEVSF-------YQGYTSPYQHV-------P 200

  Fly    64 GFPSPRSALGYPFPPMHQN--SYSGYHLGSYAPP------CA--SPPKDDFSISDKCEDSGLR-- 116
            |:....|..| ...|.|:.  |..||...:.|..      ||  .|....|..|....|..|.  
Mouse   201 GYIDMVSTFG-SGEPRHEAYISMEGYQSWTLANGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQP 264

  Fly   117 ---VNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSK 178
               |..:|:|.|.|   |:.|||::|...:...:::...:|..::|:..|::.||.|||||||.|
Mouse   265 DMCVYRRGRKKRVP---YTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVK 326

  Fly   179 YKKMM 183
            .||::
Mouse   327 DKKIV 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DllNP_001137759.1 Homeodomain 125..181 CDD:459649 20/55 (36%)
Hoxd13NP_032301.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33
HoxA13_N <121..168 CDD:463521 6/17 (35%)
Homeodomain 273..329 CDD:459649 21/58 (36%)
Blue background indicates that the domain is not in the aligned region.

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