DRSC/TRiP Functional Genomics Resources

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Protein Alignment key and optn

DIOPT Version :10

Sequence 1:NP_001246503.1 Gene:key / 37967 FlyBaseID:FBgn0041205 Length:389 Species:Drosophila melanogaster
Sequence 2:XP_017947825.1 Gene:optn / 100144665 XenbaseID:XB-GENE-943658 Length:538 Species:Xenopus tropicalis


Alignment Length:431 Identity:97/431 - (22%)
Similarity:176/431 - (40%) Gaps:93/431 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDEESFVILGSSPCSSLMPDSSLRSDVC-GNAQEAKETVASTSTQPPTVNCIPVSITASQQQHK 64
            :|::||..|:.....:..:||    .||. ......||..:.|..:...::.:..|:....|:.:
 Frog   155 ISEKESGEIIHEEKANKTLPD----YDVSYSRTNSVKEEGSGTEPEEVAISRLLRSLREETQKVE 215

  Fly    65 SLDSGSSQQQSLA------TSFIMGEIQSDVLKNSVYSQFPSLCSLQGSAEEVVKLQ---NMMTE 120
            .|:...|:.:.||      :.|...::|::..|             |..:||:..|.   .:.:|
 Frog   216 RLEKELSEHKRLAELKEKTSRFCDKDMQTEQEK-------------QNQSEEIFLLHAFFQISSE 267

  Fly   121 YLALKSTLDKVNQTMLNYHNLTQQWRQEAADREHQYKEHVKECQAQIAILRVENQELKRDLETK- 184
            ...||..:..:|:.:           ||..|:.::.|:.....|.:..:|....||...|||.| 
 Frog   268 VDILKQKVKSLNKEL-----------QETNDKLNEAKQLKNSLQEKCILLDKRLQENAVDLEEKQ 321

  Fly   185 -----IEQIE-GVHTIRLKEQDELRKSVSEKQSLIDNMRVEIDKLKQLNHSFEFV----PEYATE 239
                 |:::| .|.::..:.:.|..|:.:||..|. .::|..||   ||..::..    .|..::
 Frog   322 NLRYTIKKLELQVESMESEIKLERNKTEAEKNQLA-ILQVAYDK---LNSEYQETRIRESEKVSK 382

  Fly   240 SKSQELIKKM----------QLDINELKARDIQKQEVIKG---LQIQNDIYRRDFEMERADREKN 291
            .:..:|::|:          |.:|:|::..|.:.:|.|:.   |:.|.|:|..||..||:.||..
 Frog   383 VEFNDLVEKLDACEKALAKKQFEIDEIRQMDAKHKEDIETIGLLRAQIDVYCADFHAERSARENI 447

  Fly   292 AGEKDQYLMDLRSLQRRNQEL---------IEALAESHKASKACSTASPLSSSRSNLREEQRPVR 347
            ..||:|....|..:.:.:::|         ||.|...|.......:..|                
 Frog   448 HQEKEQLEARLAYMIQESEKLKAEMMGRQSIEQLQRRHSCRLENVSGGP---------------- 496

  Fly   348 ILDPTGASS--RTSDTTLRCPICSKSFNALSVLQSHVNDCL 386
            .|.|.||.:  :.|.|...||.|:.:...:..||.||.||:
 Frog   497 YLVPRGAENMGQPSITVYTCPKCNLTVPDIDTLQIHVMDCI 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
keyNP_001246503.1 Smc <120..>318 CDD:440809 56/230 (24%)
UBAN 230..313 CDD:197361 24/108 (22%)
optnXP_017947825.1 NEMO 31..97 CDD:431942
SMC_prok_B <194..>412 CDD:274008 48/245 (20%)
CC2-LZ 370..469 CDD:465155 23/98 (23%)
zf_C2H2_10 514..537 CDD:436483 8/22 (36%)
Blue background indicates that the domain is not in the aligned region.

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