DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3594 and pabpn1l

DIOPT Version :10

Sequence 1:NP_523855.1 Gene:CG3594 / 37964 FlyBaseID:FBgn0035063 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_021333291.1 Gene:pabpn1l / 796580 ZFINID:ZDB-GENE-080709-5 Length:166 Species:Danio rerio


Alignment Length:76 Identity:28/76 - (36%)
Similarity:45/76 - (59%) Gaps:4/76 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 TNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKR----RGGFAFVEMADLSSFQNAFQLH 171
            ::|..:||.|:::..|.|:||::|::.|.|..:.||..|    ..|||::|.:|..|.:.|..|.
Zfish    34 SDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALD 98

  Fly   172 NTELQGRNIKV 182
            .|..:||.|||
Zfish    99 ETLFRGRVIKV 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3594NP_523855.1 SF-CC1 36..>197 CDD:273721 28/76 (37%)
RRM 116..187 CDD:440488 27/71 (38%)
pabpn1lXP_021333291.1 RRM_SF 38..113 CDD:473069 27/72 (38%)

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