DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3594 and Rbm19

DIOPT Version :9

Sequence 1:NP_523855.1 Gene:CG3594 / 37964 FlyBaseID:FBgn0035063 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_083038.1 Gene:Rbm19 / 74111 MGIID:1921361 Length:952 Species:Mus musculus


Alignment Length:181 Identity:55/181 - (30%)
Similarity:80/181 - (44%) Gaps:25/181 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GTYVDKEDGRNPSDPEDSKSEDEAKSDDE---AAAEGSAAS-GAEEEESAENGQITSDQLSSLLR 106
            |....|:|.::....|.::.|.|...|.|   |:.||:.|| |..|||..|..:...:.:...  
Mouse   660 GAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGC-- 722

  Fly   107 GASKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKRRG-------GFAFVEMADLSSF 164
                    .|::.||||.||::.|:..||..|.:||..|.||:..       ||.|||.......
Mouse   723 --------TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 779

  Fly   165 QNAF-QLHNTELQGRNIKVQISEAGKK---KSANKKNIIKQKNRKLAEMRN 211
            |.|. ||....:.|..::|:|||...|   .|..||.:.|::......:||
Mouse   780 QKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRN 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3594NP_523855.1 RRM3_Prp24 114..184 CDD:240744 27/77 (35%)
Rbm19NP_083038.1 RRM <2..183 CDD:223796
RRM1_RBM19 2..77 CDD:241008
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 85..126
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..267
RRM2_RMB19 293..364 CDD:240946
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 367..395
RRM3_RBM19 398..476 CDD:241011
ELAV_HUD_SF 402..798 CDD:273741 44/147 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..504
RRM4_RBM19 584..655 CDD:241013
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 664..719 17/54 (31%)
RRM5_RBM19_like 722..801 CDD:240764 27/88 (31%)
RRM6_RBM19 824..902 CDD:241015 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0110
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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