DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3594 and Hrb87F

DIOPT Version :10

Sequence 1:NP_523855.1 Gene:CG3594 / 37964 FlyBaseID:FBgn0035063 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster


Alignment Length:108 Identity:28/108 - (25%)
Similarity:46/108 - (42%) Gaps:25/108 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 AEEEESAENG------QITS-DQLSSLLRGASKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKS 142
            ||:.:|  ||      :||. :||..            |::..|::.||.|.|:.||...|.:..
  Fly     2 AEQNDS--NGNYDDGEEITEPEQLRK------------LFIGGLDYRTTDDGLKAHFEKWGNIVD 52

  Fly   143 IRIPK----KRRGGFAFVEMADLSSFQNAFQLHNTELQGRNIK 181
            :.:.|    ||..||.|:..:......||......::.||.::
  Fly    53 VVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVE 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3594NP_523855.1 SF-CC1 36..>197 CDD:273721 28/108 (26%)
RRM 116..187 CDD:440488 19/70 (27%)
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 19/83 (23%)
RRM_SF 116..188 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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