DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3594 and Rbm19

DIOPT Version :9

Sequence 1:NP_523855.1 Gene:CG3594 / 37964 FlyBaseID:FBgn0035063 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001358888.1 Gene:Rbm19 / 304512 RGDID:1308928 Length:955 Species:Rattus norvegicus


Alignment Length:184 Identity:55/184 - (29%)
Similarity:83/184 - (45%) Gaps:30/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GTYVDKEDGRNPSDPEDSKSEDEAKSD-------DEAAAEGSAASGAEEEESAENGQITSDQLSS 103
            |....|:|    |.||....:.||:.:       ::|..||:.||..:.||..|..:...::.| 
  Rat   662 GAAPQKKD----SQPEQPAQKAEAEQETVLNPEGEKALVEGAEASMGKMEEEEEEEEEEEEEES- 721

  Fly   104 LLRGASKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKRRG-------GFAFVEMADL 161
             :.|.:      |::.||||.||::.|:..||..|.|||..|.||:..       ||.|||....
  Rat   722 -IPGCT------LFIKNLNFNTTEETLKEVFSRVGAVKSCTISKKKSKAGVLLSMGFGFVEYKKP 779

  Fly   162 SSFQNAF-QLHNTELQGRNIKVQISEAGKK---KSANKKNIIKQKNRKLAEMRN 211
            ...|.|. :|....:.|..::|:|||...|   .|..||.:.|::......:||
  Rat   780 EQAQKALKRLQGHIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRN 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3594NP_523855.1 RRM3_Prp24 114..184 CDD:240744 27/77 (35%)
Rbm19NP_001358888.1 RRM <2..184 CDD:223796
RRM1_RBM19 2..77 CDD:241008
RRM2_RMB19 294..365 CDD:240946
RRM3_RBM19 400..478 CDD:241011
RRM4_RBM19 586..657 CDD:241013
RRM5_RBM19_like 725..804 CDD:240764 27/84 (32%)
RRM6_RBM19 827..905 CDD:241015 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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