DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3594 and Rbm19

DIOPT Version :10

Sequence 1:NP_523855.1 Gene:CG3594 / 37964 FlyBaseID:FBgn0035063 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001358888.1 Gene:Rbm19 / 304512 RGDID:1308928 Length:955 Species:Rattus norvegicus


Alignment Length:184 Identity:55/184 - (29%)
Similarity:83/184 - (45%) Gaps:30/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GTYVDKEDGRNPSDPEDSKSEDEAKSD-------DEAAAEGSAASGAEEEESAENGQITSDQLSS 103
            |....|:|    |.||....:.||:.:       ::|..||:.||..:.||..|..:...::.| 
  Rat   662 GAAPQKKD----SQPEQPAQKAEAEQETVLNPEGEKALVEGAEASMGKMEEEEEEEEEEEEEES- 721

  Fly   104 LLRGASKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKRRG-------GFAFVEMADL 161
             :.|.:      |::.||||.||::.|:..||..|.|||..|.||:..       ||.|||....
  Rat   722 -IPGCT------LFIKNLNFNTTEETLKEVFSRVGAVKSCTISKKKSKAGVLLSMGFGFVEYKKP 779

  Fly   162 SSFQNAF-QLHNTELQGRNIKVQISEAGKK---KSANKKNIIKQKNRKLAEMRN 211
            ...|.|. :|....:.|..::|:|||...|   .|..||.:.|::......:||
  Rat   780 EQAQKALKRLQGHIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRN 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3594NP_523855.1 SF-CC1 36..>197 CDD:273721 51/168 (30%)
RRM 116..187 CDD:440488 29/78 (37%)
Rbm19NP_001358888.1 RRM1_RBM19 2..77 CDD:409980
RRM2_RMB19 294..365 CDD:409925
RRM3_RBM19 400..478 CDD:409983
RRM4_RBM19 586..657 CDD:409984
RRM5_RBM19_like 725..804 CDD:409757 27/84 (32%)
RRM6_RBM19 827..905 CDD:409985 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.

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