DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3594 and nop4

DIOPT Version :10

Sequence 1:NP_523855.1 Gene:CG3594 / 37964 FlyBaseID:FBgn0035063 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_596114.1 Gene:nop4 / 2540871 PomBaseID:SPBC4F6.14 Length:674 Species:Schizosaccharomyces pombe


Alignment Length:164 Identity:47/164 - (28%)
Similarity:74/164 - (45%) Gaps:24/164 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 ENGQITSDQLSSLLRGASKTNRHVLYVTNLNFETTK-DDLELHFSAAGTVKSIRIPKKRRG---G 152
            :..::.:||..::.:...:.||..|.:.||.:...| ..||.|||..|.|:.|:||.|..|   |
pombe    85 KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCG 149

  Fly   153 FAFVEMADLSSFQNAF-QLHNTELQGRNIKVQIS------EAGKKKSAN----KKNIIKQKNRKL 206
            ||||.|.|..:.:.|. .|:.||:.||.|.|..:      ||...|.|:    .|..:..:...:
pombe   150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSI 214

  Fly   207 ------AEMRNEQKTFTKSGKFYDKDLKKEKAKE 234
                  |:..:|::.   .|....|:|..|..:|
pombe   215 VTEDASADSESEEEV---DGHSEGKELAGESEEE 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3594NP_523855.1 SF-CC1 36..>197 CDD:273721 39/119 (33%)
RRM 116..187 CDD:440488 31/81 (38%)
nop4NP_596114.1 RRM1_Nop4p 5..84 CDD:410075
RRM2_Nop4p 107..189 CDD:410076 31/81 (38%)
RRM3_Nop4p 276..390 CDD:410077
RRM4_Nop4p 458..614 CDD:410078
Blue background indicates that the domain is not in the aligned region.

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