DRSC/TRiP Functional Genomics Resources

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Protein Alignment egg and Setdb2

DIOPT Version :10

Sequence 1:NP_611966.3 Gene:egg / 37962 FlyBaseID:FBgn0086908 Length:1262 Species:Drosophila melanogaster
Sequence 2:NP_001307649.1 Gene:Setdb2 / 239122 MGIID:2685139 Length:697 Species:Mus musculus


Alignment Length:762 Identity:225/762 - (29%)
Similarity:318/762 - (41%) Gaps:205/762 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   639 ESNGTWLYARVIDIDCSLVLMQFEGDKNHTEWIYRGSLRLGPVFRETQNNMNSSSAQQLRVPRRT 703
            |.||          |.....|:.:.|         |.:.|  :|.:|||.::|.. |:::....|
Mouse     3 EKNG----------DAKTFWMELQDD---------GKVDL--MFEKTQNVLHSLK-QKIKDGSAT 45

  Fly   704 EPFIRYTKEM----ESSSKVNQQMRAFARKSSASAQNNALAAASSAATPAGGRTNAGGVSTSNSA 764
            ..  .|.:.|    |::....|.:.......:.|.|.|     .|:|.|              ||
Mouse    46 NG--DYVQAMNLVNEATLSNTQTLEKDHTPVTQSEQEN-----KSSAVP--------------SA 89

  Fly   765 SAVRHLNNSTIYVDDENRPKGHVVYFTAKRNLPPKMYKC----------------HECSPNCLFK 813
            |.            |.:.|||..:....|:...|...|.                |.||..||.:
Mouse    90 SC------------DNSCPKGCTIPSPGKKVFLPVKNKADNLVKKEAPLHISFHRHICSRTCLME 142

  Fly   814 IVHRLDSYSPLAKPLLSGWERLVMRQKTKKS---VVYKGPCGKSLRSLAEVHRYLRATE-NVLNV 874
            ....|...:||..|:...::|...:..:..|   |.||.|||::||::.||..||..|| |.|..
Mouse   143 TPLSLKGENPLQLPIRCHFQRRHAKTNSHSSALHVNYKTPCGRNLRNMEEVFHYLLETECNFLFT 207

  Fly   875 DNFDFTPDLKCLAEYSIDPSIVKDTDISKGQEKMAIPLVNYYDNTLPPPCTYAKQRIPTEGVHLN 939
            |||.|...::....:.....:|.|.|||.|.|.::||..|..||:..|...| :..:.....|||
Mouse   208 DNFSFNTYVQLTRNHPKQNEVVSDVDISNGVESVSIPFCNEIDNSKLPRFKY-RNTVWPRIYHLN 271

  Fly   940 LDEEFLLCCDCEDDCSDKSKCACWQLTVAGVRYCNPKKPIEEIGYQYKRLHEHVPTGIYECNSRC 1004
            ....|...|||.:.|.|..||||.|||....:.|......|..||:||||...:||||||||..|
Mouse   272 FSNMFSDSCDCSEGCIDIKKCACLQLTAKNAKACPLSSDGECAGYKYKRLQRLIPTGIYECNLLC 336

  Fly  1005 KCKKN-CLNRVVQFSLEMKLQVFKTSNRGWGLRCVNDIPKGAFICIYAGHLL-----TETMANEG 1063
            ||.|. |.|||:|..:.::|||||:..:|||:||::||.||.|:|||:|.||     .:|...|.
Mouse   337 KCNKQMCQNRVIQHGVRVRLQVFKSEKKGWGVRCLDDIDKGTFVCIYSGRLLRRATPEKTNIGEN 401

  Fly  1064 GQDAGDEYFADLDYIEVAEQLKEGYESEVDHSDPDAEEDNGGPDAED-----DDDFRPN------ 1117
            |::.        .:| |.....:..:.||..||.||..|:  |.|||     ..|.:..      
Mouse   402 GREQ--------QHI-VKNSFSKKRKLEVVCSDCDAHCDS--PKAEDCPPKLSGDLKEPAVEMNH 455

  Fly  1118 ---------------------YHYQRK----IKRSSRSGSTQNSSTQSSE-LDSQERAV---INF 1153
                                 :||..|    :...|.:...:|....:.| ::|:.|..   ::.
Mouse   456 RNISRTQHHSVIRRTKSKTTVFHYSEKNMGFVCSDSAAPEDKNGFKPAQEHVNSEARRAHEDLSS 520

  Fly  1154 NPNADLDET------------VRENS-------------------VRRLFGK------------- 1174
            ||..|.::|            .||:|                   |..:.||             
Mouse   521 NPAGDSEDTQLTESDVIDITASREDSAPAYRCKHATIVDRKDTKQVLEVPGKKSQEEEPAASQSQ 585

  Fly  1175 -----DEAP-------------------YIMDAKTTGNLGRYFNHSCSPNLFVQNVFVDTHDLRF 1215
                 :|.|                   :::||...||:||:.||||.|||:||||||:|||..|
Mouse   586 QALCDEELPSERTKIPSASLMQLSKESLFLLDASKEGNVGRFLNHSCCPNLWVQNVFVETHDRNF 650

  Fly  1216 PWVAFFSAAHIRSGTELTWNYNYEVGVVPGKVLYCQCGAPNCRLRLL 1262
            |.||||:..::::.|||||:|.||.|..|.|.:.||||...||.:|:
Mouse   651 PLVAFFTNRYVKARTELTWDYGYEAGATPAKEILCQCGFNKCRKKLI 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eggNP_611966.3 Tudor_SETDB1_rpt1 532..622 CDD:410453
Tudor_SETDB1_rpt2 630..684 CDD:410548 9/44 (20%)
HMT_MBD 823..879 CDD:238689 24/59 (41%)
SET_SETDB1 900..1262 CDD:380915 156/475 (33%)
Setdb2NP_001307649.1 HMT_MBD 152..212 CDD:238689 24/59 (41%)
SET 210..696 CDD:394802 160/497 (32%)
SET 365..>435 CDD:459965 29/80 (36%)
Blue background indicates that the domain is not in the aligned region.

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