DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment egg and setdb1

DIOPT Version :9

Sequence 1:NP_611966.3 Gene:egg / 37962 FlyBaseID:FBgn0086908 Length:1262 Species:Drosophila melanogaster
Sequence 2:NP_001238764.2 Gene:setdb1 / 100490309 XenbaseID:XB-GENE-853380 Length:1282 Species:Xenopus tropicalis


Alignment Length:1421 Identity:402/1421 - (28%)
Similarity:590/1421 - (41%) Gaps:501/1421 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 EEYKIENTLKGHKRISLTEIEEHKIVDKKDDVLE---------VELEKGTAPKAAEDEKLNALLS 255
            |..::|..:.....||:.::  |:::|::.:.:|         :|||:....|.||.:.::.|..
 Frog     5 ETMELEQMVVKELGISMDDL--HELIDRELEKIEFVKQRKAQLLELEQLVKQKEAEVDHVDKLFD 67

  Fly   256 DGDVFYDKECVNCNCTKLHKQYVLANMATLNFYQVLRKSSKQQFLCMGCHDTAMDLYEEYAGQLM 320
            :.....|      :|..|.|          :.|..:..:.|                        
 Frog    68 NATRAVD------DCEMLVK----------SLYNQIGMTYK------------------------ 92

  Fly   321 AKQPLLLKDFHQDHADFVALDSSDEEEEEKQPEKSDFSKNKLQLIE--DELDDAIKNV-----LN 378
                                :||.|:|...:|         :::||  ||.||.:.:|     ::
 Frog    93 --------------------ESSSEDEGSSKP---------VEVIEIPDEDDDDVMSVGSGEAVS 128

  Fly   379 KVDFTAQLSWSKTILQAKADHLERQFALA------DVE--LEKVQTTADKMHCALYNSCPVAHKH 435
            |:              .|..||.|:...|      ||:  :|.:|..:|......     .:|..
 Frog   129 KI--------------PKEKHLLREAMAAMKRSRQDVQSIVEAIQKKSDGPQTRF-----SSHPS 174

  Fly   436 LPTLDIEPSDYV---HEVPPPGEIVRPPIQLGETYYAVKNKAIASW-----VSIKVIEFTESTAI 492
            .||..:..|:..   :::...|::|.....||:       |...:|     :||:.:        
 Frog   175 SPTSSVGGSNQASASNDMSKDGDLVVGMRILGK-------KRTKTWHKGTLISIQCV-------- 224

  Fly   493 NGNTMKSYKIRYLNTPYQMIKTVTAKHIAY-FEPPPVRLTIGTRVIA-YFDGTTLSRGKDKGVVQ 555
              ...|.||:::.|....::   :..|||| :.|||..|.:|:||:| |.||.           |
 Frog   225 --GPGKKYKVKFDNKGKSLL---SGNHIAYDYHPPPENLVVGSRVVAKYKDGN-----------Q 273

  Fly   556 SAFYPGIIAEPLKQANRYRYLIFYDDGYTQYVPHRDVRLVCQASEKVWEDVHAAS-RDFIQKYVE 619
            ...|.||:|||....|:.|||||:||||..||.|.::..||:.....|||:...| |||||:||.
 Frog   274 VWLYAGIVAEPPSNKNKMRYLIFFDDGYASYVTHAELYPVCRPLISSWEDIEDVSCRDFIQEYVN 338

  Fly   620 KYSVDRPMVQCTRGQSMTTESNGTWLYARVIDIDCSLVLMQFEGDKNHTEWIYRGSLRLGPVFRE 684
            .|. :||||....||.:.||..|||..::|.::|.|||.:.|..|| ..|||||||.||.|:|  
 Frog   339 AYP-NRPMVLLKSGQLIKTEWEGTWWKSKVEEVDGSLVKILFLDDK-RCEWIYRGSTRLEPMF-- 399

  Fly   685 TQNNMNSSSA---------QQLRVP-----RRTEPFIRYTKEM---------------------- 713
               :|.:|:|         ||...|     |...|.::||.::                      
 Frog   400 ---SMKTSTASTQEKKQAGQQRTRPNVGAIRSKGPVVQYTHDLTGSEPEPKPAAPPSPLSIPSPQ 461

  Fly   714 ----ESSSKVNQQMRAFARKSSA-------SAQNNALAAASSAATPAGG--------RTNAG--- 756
                :|.|:..|..:..|:||::       |.|::.:.:.|....|...        ::|..   
 Frog   462 LIDTDSDSQQAQSKKQVAKKSTSFRPGSAGSGQSSPIPSESVPPPPPPPPPVVQRPFQSNQSVQP 526

  Fly   757 -----------------GVSTSNSASAVRHLNN----------STIYVDDENRPKGHV--VYFTA 792
                             |:.|..:...::.:..          .||.....||....:  ::...
 Frog   527 VQSIQSIQNIQTIQTIQGIQTIQAIQPIQTIQTLQPIQTIQPLQTIQTLQGNRIVTSIQQIHIIQ 591

  Fly   793 KRNLP-------PK---MYKCHECSPNCLFKI---VHRLDSYSPLAKPLLSGWERLVMRQKTKKS 844
            ..|:|       ||   .|..|.|:..||.:|   .||  ..:||..|||..:.|:..|::..:.
 Frog   592 AENVPAETTYKAPKEKLFYLPHVCNYTCLSRIRPVSHR--GKNPLLVPLLYDFRRMTARRRVNRK 654

  Fly   845 ----VVYKGPCGKSLRSLAEVHRYLRATENVLNVDNFDFTPDLKCLAEYSIDPSIVKD------- 898
                |:||.|||.|||::.|:.|||           |:....:..|..:.:||.::.|       
 Frog   655 MGFHVIYKTPCGLSLRTMPEIERYL-----------FEVECRMLFLEMFCLDPYVLVDRKFQPQK 708

  Fly   899 -----TDISKGQEKMAIPLVNYYDNTLPPPCTYAKQRIPTEGVHLNLDEEFLLCCDCEDDCSDKS 958
                 .||:.|:|.:.:..||..|.|.||...|:|:|||.:||.:|...|:|:.|||.|.|.|||
 Frog   709 PFYYIPDITYGKEDVPLSCVNEIDRTPPPQVAYSKERIPGKGVFINTGAEYLVGCDCTDGCRDKS 773

  Fly   959 KCACWQLTVAGVRYCNPKKPIEEI-GYQYKRLHEHVPTGIYECNSRCKCKKN-CLNRVVQFSLEM 1021
            ||||.|||:.... |.|...:..: |||:|||.|.:|||:||||.||||..| |.||:||..|::
 Frog   774 KCACHQLTIQATG-CTPGAQLNPMAGYQHKRLEECLPTGVYECNKRCKCSANMCNNRLVQHGLQV 837

  Fly  1022 KLQVFKTSNRGWGLRCVNDIPKGAFICIYAGHLLTETMANEGGQDAGDEYFADLDYIEVAEQLKE 1086
            :||:|||.|:|||:||::||.||:|:|||||.:||:..|::.|.:.||||||:||:||..|..||
 Frog   838 RLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENYKE 902

  Fly  1087 GYESE---------VDHSDPDAEEDNGGPDAED-----DDDFRPN-----------YHYQRKIKR 1126
            ||||:         ||..|.| ||:.|..|.::     ||:|..|           |..:|:.:.
 Frog   903 GYESDAKSSSDSSGVDLKDDD-EENTGSEDQDESNDSSDDNFGKNEDITTSSVWRSYATRRQTRG 966

  Fly  1127 SSRSGSTQNSSTQS------------------------------------SELDSQERA------ 1149
            ...:|:::.:|..|                                    |.:||..|:      
 Frog   967 QKENGTSETASKDSALARQTSQDETTDCKLPEETSKNKVASWLSSNTMADSLMDSDSRSSLKMGD 1031

  Fly  1150 ------------------------VINFNP----------------------------------- 1155
                                    :..:||                                   
 Frog  1032 ASETDKPKESDEASKYPGFGEGNRMYGYNPAPAKKDGVRRPVSKTALHQNKRQSNSAQPTDEVLT 1096

  Fly  1156 ------------------------------------NADLDE----------------------- 1161
                                                .:|.:|                       
 Frog  1097 LSSSSESEVGSGTNGTKKPAAQATANDSDDIQTISSGSDEEEEKKNVATTAGPVKRQVAVKSTRG 1161

  Fly  1162 ---------TVREN-----------SVRRLFGKDEAPYIMDAKTTGNLGRYFNHSCSPNLFVQNV 1206
                     ||:.|           :.|:.|..:|:.||:|||..||||||.|||||||||||||
 Frog  1162 FALKSTHGITVKTNMASGEGGTGRRNTRQFFDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNV 1226

  Fly  1207 FVDTHDLRFPWVAFFSAAHIRSGTELTWNYNYEVGVVPGKVLYCQCGAPNCRLRLL 1262
            |||||||||||||||::..||:||||||:||||||.|.||.|.|.||:..||.|||
 Frog  1227 FVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKKLLCCCGSTECRGRLL 1282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eggNP_611966.3 HMT_MBD 823..879 CDD:238689 21/59 (36%)
Pre-SET 901..1013 CDD:282838 56/113 (50%)
SET 1022..1239 CDD:214614 122/421 (29%)
setdb1NP_001238764.2 DUF5604 193..250 CDD:408109 15/76 (20%)
Tudor_SETDB1_rpt1 260..341 CDD:410453 40/91 (44%)
Tudor_SETDB1_rpt2 348..401 CDD:410548 26/58 (45%)
SP1-4_N <515..>594 CDD:425404 7/78 (9%)
MBD 631..706 CDD:128673 25/85 (29%)
SET_SETDB1 708..>905 CDD:380915 101/197 (51%)
MSCRAMM_ClfB <918..1045 CDD:411414 20/127 (16%)
SET <1193..1282 CDD:394802 64/88 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 118 1.000 Domainoid score I5796
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 417 1.000 Inparanoid score I1773
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D102569at33208
OrthoFinder 1 1.000 - - FOG0007137
OrthoInspector 1 1.000 - - oto104881
Panther 1 1.100 - - LDO PTHR46024
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X219
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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