DRSC/TRiP Functional Genomics Resources

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Protein Alignment GstE12 and Vars1

DIOPT Version :9

Sequence 1:NP_001246500.1 Gene:GstE12 / 37960 FlyBaseID:FBgn0027590 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_445744.1 Gene:Vars1 / 25009 RGDID:3950 Length:1264 Species:Rattus norvegicus


Alignment Length:192 Identity:43/192 - (22%)
Similarity:66/192 - (34%) Gaps:66/192 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 LKGEHLTPEFLKLNPQHTIPTLID---------GEATIIDSHAICAYLVEKYGQKEQQLYPKELV 92
            |||:.:...||    ..::|.:.|         |...|..:|             :|..|  |:.
  Rat   559 LKGKSVVHPFL----SRSLPIVFDDFVDMEFGTGAVKITPAH-------------DQNDY--EVG 604

  Fly    93 QRANVDARLHLDS-GHLF----------------ARLRFLYEPILYYGSTD-------CSIDKIA 133
            ||..::|...:|| |.|.                |.|..|.|..|:.|..|       |:..|  
  Rat   605 QRHRLEAISIMDSKGALVNVPPPFLGLPRFEARKAVLAALKEQGLFRGIKDNPMVVPLCNRSK-- 667

  Fly   134 YIQKCWEILEGFLKDQPYL-CGSDLTIADFCAVATVTSVNDTAPIDEFKFPKMHAWLKRLAE 194
                  :::|..|:.|.|: ||.....|.    |.||. .|...:.|......|:|:..:.:
  Rat   668 ------DVVEPLLRPQWYVRCGEMAQAAS----AAVTR-GDLRILPEAHQRTWHSWMDNIRD 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GstE12NP_001246500.1 GST_N_Delta_Epsilon 4..77 CDD:239343 10/48 (21%)
GstA 6..201 CDD:223698 43/192 (22%)
GST_C_Delta_Epsilon 92..210 CDD:198287 30/128 (23%)
Vars1NP_445744.1 GstA <56..203 CDD:223698
GST_C_family 92..213 CDD:295467
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..296
PTZ00419 282..1264 CDD:240411 43/192 (22%)
ValRS_core 335..938 CDD:185677 43/192 (22%)
'HIGH' region 344..354
tRNA-synt_1_2 513..640 CDD:290334 20/99 (20%)
'KMSKS' region 862..866
Anticodon_Ia_Val 938..1075 CDD:153416
Val_tRNA-synt_C 1196..1258 CDD:287436
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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