DRSC/TRiP Functional Genomics Resources

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Protein Alignment GstE12 and vars1

DIOPT Version :9

Sequence 1:NP_001246500.1 Gene:GstE12 / 37960 FlyBaseID:FBgn0027590 Length:223 Species:Drosophila melanogaster
Sequence 2:NP_001298275.1 Gene:vars1 / 114427 ZFINID:ZDB-GENE-010601-1 Length:1271 Species:Danio rerio


Alignment Length:216 Identity:43/216 - (19%)
Similarity:82/216 - (37%) Gaps:70/216 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AKAIGLDLELRPINLLKGEHLTPEFLKLNPQHTIPTLIDGEATIIDSHAICAYLVEKYGQKEQQL 86
            :|::|..::  |::::.|..|...:.:|...:..|..|:               ..|.|||..  
Zfish   867 SKSLGNVID--PLDVITGISLEGLYAQLADSNLDPLEIE---------------KAKQGQKSD-- 912

  Fly    87 YPKELVQRANVDARLHLDSGHLFARLRFLYEPILYYGS--TDCSID--KIA----YIQKCWEIL- 142
            ||.. :.....||            |||   .:..|.|  .|.::|  :|.    :..|.|..: 
Zfish   913 YPTG-IPECGTDA------------LRF---ALCAYTSQGRDINLDVNRILGYRHFCNKLWNAVK 961

  Fly   143 -------EGFLK-DQPYLCGSDLTIADFCAVATVTSVNDTAPID----EFKFPKM-----HAWLK 190
                   |||:. ::..||||: :::|...::.:::.  .|..|    .:.||.:     :.||.
Zfish   962 FAMRTLGEGFVPCEKAQLCGSE-SVSDRWILSRLSAA--VALCDGGFKAYDFPTITTAIYNFWLY 1023

  Fly   191 RLAEL------PYYQEVNGDG 205
            .|.::      |.:...:..|
Zfish  1024 ELCDVYLECVKPVFSRTDSKG 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GstE12NP_001246500.1 GST_N_Delta_Epsilon 4..77 CDD:239343 8/54 (15%)
GstA 6..201 CDD:223698 42/210 (20%)
GST_C_Delta_Epsilon 92..210 CDD:198287 29/146 (20%)
vars1NP_001298275.1 GstA <45..192 CDD:223698
GST_C_ValRS_N 80..202 CDD:198327
PTZ00419 291..1270 CDD:240411 43/216 (20%)
ValRS_core 340..941 CDD:185677 22/108 (20%)
tRNA-synt_1_2 518..643 CDD:290334
Anticodon_Ia_Val 941..1081 CDD:153416 21/107 (20%)
Val_tRNA-synt_C 1203..1266 CDD:287436
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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