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Protein Alignment Usp15-31 and Usp11

DIOPT Version :9

Sequence 1:	NP_611959.2	Gene:	Usp15-31 / 37954	FlyBaseID:	FBgn0050421	Length:	1272	Species:	Drosophila melanogaster
Sequence 2:	NP_663603.3	Gene:	Usp11 / 236733	MGIID:	2384312	Length:	921	Species:	Mus musculus

Alignment Length:	792	Identity:	218/792 - (27%)
Similarity:	325/792 - (41%)	Gaps:	203/792 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly   256 WPADQ----------------TPGVMGLKNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKADLKR 304
            ||:.|                .||:.||.|.|||||||:.|||||:...|.|||:.::|..:|..
Mouse   232 WPSAQLCGMNNIPDEDEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNF 296

  Fly   305 RNKINSRKFGTKGELTEQLANVLKALWTCKNESDHSTSFKAVVDRYGTQFRSSTQHDAQEFLFWL 369
            ||.:     |.||||.|..|:::|..|:..:.|.....||..|..:.:||....|||:||.|.:|
Mouse   297 RNPL-----GMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFL 356

  Fly   370 LDKVHEDLNTASKRRYKSLKNSYGRSDEVIAAETLANHIRCNNSFVQAVFQAQFRSSLTCPRCEK 434
            ||.:|||||...|:.|..|.|..||.|..:|.|...||.|.|:|.:...|...|:|:|.||.|..
Mouse   357 LDGLHEDLNRVKKKEYVELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGN 421

  Fly   435 QSNTFDPFHCISVQLPQLTQQTIFVTVVYM--TRLPRQVRMGLRVPAGSPIVALREQLQADTGIE 497
            .|.|||||..:||.||..:::.:.|..|.|  .|.|.|.|  :.||....|..|...|...|.:.
Mouse   422 VSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQHR--VVVPKKGNISDLCVALSTHTSVA 484

  Fly   498 GSRMVLVDLNAEGFTRVFYDTQPVETLSSIETIYCIEVPA-ATPVAKAATPSETGDKSAPTAV-- 559
            ..:|::.|:.:..|.:::....|:..:...:.|:..||.. ..||     .....|...|..:
Mouse   485 PDKMIVADVFSHRFYKLYQLEDPLSGILDRDDIFVYEVTGRIEPV-----EGSRDDIVVPVYLRE 544

  Fly   560 -TPSPAAAQSQADLLLLVANVYRAKDGADITRFGAPFSMKAPRD-CSYQDLQKRMLREMAPLLKP 622
             |||.....|...|:|                ||.|..:..||| .|::.|...::..::
Mouse   545 RTPSRDYNNSYYGLIL----------------FGHPLLVSVPRDRFSWEGLYNILMYRLS----- 588

  Fly   623 EVFSYATPLAEMFRIRLQDPSADPDTYLEQVEH---------------------PLLTE------ 660
               .|.|           .|::|.|...|:|:.                     |.:.:
Mouse   589 ---RYVT-----------KPTSDEDDGDEKVDEDEDEDVEDDSSSEEEKEEMSAPTVNDGTREAE 639

  Fly   661 ----------------MID-----------------MALSVLSSE------AGPQHIK----LLL 682
                            ::|                 ..|..::|.      ..|:.::    :.:
Mouse   640 QEQAGTSSGVTERCPSLLDNSLRASQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEMQTQPYIAM 704

  Fly   683 EWSSPEAHFISKQQDTEEA--VVEHESVARLSASKPSDTAALTLEQCLEHYTKAETLSAEDAWRC 745
            :|   |.....:..|..||  .|:|:.|..:....|     :.|::|::.:|..|||..|:.|.|
Mouse   705 DW---EPDMKRRYYDEVEAEGYVKHDCVGYMLKKSP-----VQLKECIKLFTTVETLEKENPWYC 761

  Fly   746 PHCQQYLPVVKTLGLWSLPDILVVHFKRFRQHQSKGPQAAKLTTMVKFPLTAFDMSPHLARGVHE 810
            ..|:|:....|.|.||.||::|::|.|||...:.   ...||.|:|:||:...|.|..:.:..:|
Mouse   762 SSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKI---SREKLDTLVQFPIRDLDFSEFVIKPKNE 823

  Fly   811 SASSSLGMGTGIGLGLGLGSNPWKKARSVDSRSSTLNSRCDAKDTRYDLYAVCYHQGDTLETGHY 875
            |:....                                       :|||.||..|.|. :..|||
Mouse   824 SSPDLY---------------------------------------KYDLIAVSNHYGG-MRDGHY 848

  Fly   876 TAACKNPYDRQWYKFDDQRVSKVPEDDIEQDIINNEAYMLFYQRRSVDAGECSGSSSNSGDHWVS 940
            |....|....||:.|||..||.|.|:.||    :..||:|||||:.|...:...|||:      :
Mouse   849 TTFACNKDSGQWHYFDDNSVSPVNENQIE----SKAAYVLFYQRQDVGRRQSQTSSSD------T 903

  Fly   941 RIAPASSSSASS 952
            ..:|.|||:.:|
Mouse   904 PASPVSSSTPNS 915

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.