DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SiaT and st6galnac4

DIOPT Version :9

Sequence 1:NP_523853.1 Gene:SiaT / 37950 FlyBaseID:FBgn0035050 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001038835.1 Gene:st6galnac4 / 751653 ZFINID:ZDB-GENE-060322-6 Length:291 Species:Danio rerio


Alignment Length:252 Identity:65/252 - (25%)
Similarity:95/252 - (37%) Gaps:64/252 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 RLFPRQKLFRNVKDIK--TCAIVSSAGSLAGSKLGRFIDTHDIVMRFNHAPTQGHEVDVGSKTTI 286
            |:.|:.:|..|:.|..  .||:|||:|.:.|...|..||..|.|:|.|.|||.|:|.|||::|::
Zfish    41 RIHPKTRLKSNLLDFHCGRCAVVSSSGQMLGGGRGPEIDQQDCVIRMNVAPTAGYEADVGNRTSL 105

  Fly   287 RVVNSQ----VVTKPEFDFTRAPIFRNVTIAAWDPGKYNGTLEDWLTSADYDLFSNYELYRRRYP 347
            |||:..    :|.:..:.|.|.   .:.....|.|.|      :.........|:......::||
Zfish   106 RVVSHTSVPLLVRQQGYFFRRE---ADTKYVIWGPEK------NMRQDGKGKTFNALVTLAKKYP 161

  Fly   348 KSRAFLIDPHSVWRLWQSLQMFAG--------NRPISKNPPSSGFIGLALLLPHCPQV------- 397
            .|..     |::.|  :.:|...|        ||..|....|:||..:.|.|..|..:       
Zfish   162 HSHV-----HTITR--EKVQYCDGVFQNETGKNRMKSGAFLSTGFFTMILALEVCDSILVYGMID 219

  Fly   398 ---------DFVEYVPSTRLNGRCHYYSKEMNSACTF--------GSWHPLAAEKLM 437
                     .||.|          |||.......|..        ...|....|||:
Zfish   220 GSYCSNANHSFVPY----------HYYEPLHLDECRMYRVHEHAKRGGHRFITEKLI 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SiaTNP_523853.1 Glyco_transf_29 224..437 CDD:279159 64/250 (26%)
st6galnac4NP_001038835.1 Glyco_transf_29 49..278 CDD:279159 62/244 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.